Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2449 183 3e-41 seq2044 111 2e-19 >seq2449 Length=712056 Score = 183 bits (202), Expect = 3e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||| || ||||| ||||| || ||||| || || || || Sbjct 481699 AATGCAGATTTTCGTGAAGACTCTGACCGGGAAGACAATCACTCTGGAAGTAGAAGCATC 481640 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| | ||||| || |||||||||||||| |||||||||||||| || Sbjct 481639 CGACACAATTGAGAATGTCAAGGCGAAGATTCAGGACAAGGAAGGAATTCCTCCAGATCA 481580 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| |||| |||||||| ||||| ||||| |||| |||||| | | || || || Sbjct 481579 ACAGCGGTTAATCTTTGCTGGAAAGCAGCTCGAAGATGGTCGTACGTTGTCGGATTACAA 481520 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||| |||||||| ||||||||||| || | ||||||||||| ||| Sbjct 481519 TATCCAGAAGGAATCAACTCTTCATCTTGTTCTCCGTCTTCGCGGAGGA 481471 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || |||||||| || ||||| || || || || |||||| | Sbjct 483802 AATGCAAATTTTTGTTAAAACGCTTACTGGAAAGACGATCACCCTCGAAGTTGAGGCGTC 483743 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| ||||||| || |||||||||||||||||||| || || || || Sbjct 483742 TGACACCATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCGCCGGATCA 483683 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||||| | || || || |||| Sbjct 483682 ACAGCGGTTGATCTTCGCAGGTA 483660 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| ||||| || || || || || || || || || || | Sbjct 483428 ATGCAAATTTTTGTAAAGACCCTTACGGGGAAAACCATCACGCTCGAAGTCGAAGCATCT 483369 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| |||| || ||||| || ||||| || |||||||||||||||||| Sbjct 483368 GACACAATCGAGAATGTGAAAGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 483309 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || || | |||||||| |||| Sbjct 483308 CAACGATTGATTTTTGCAGGTA 483287 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || || ||||||||||||| |||||| || | || || || |||| ||||||||||| Sbjct 481788 GGCAAACAACTCGAGGATGGTCGTACGCTGTCTGATTACAACATCCAGAAGGAATCCACC 481729 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||| || |||| ||||| |||||| Sbjct 481728 CTTCATCTGGTGCTGCGACTTCGTGGTGGA 481699 >seq2044 Length=4727 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27404 TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463 ||||||||||||| || ||||| || || || || || ||||| || |||||||| | Sbjct 40 TAATGCAAATCTTCGTGAAGACTCTCACGGGGAAAACAATTACCCTCGAGGTTGAAGCCT 99 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | || | ||| |||| ||||| ||||| |||||||||||||| || ||||| | Sbjct 100 CGGACACAATCGAGAATGTGAAAGCTAAGATTCAAGACAAGGAGGGAATCCCACCAGATC 159 Query 27524 AGCAGCGTCTAATTTTTGCTGGTA 27547 |||||||||| || || || |||| Sbjct 160 AGCAGCGTCTGATCTTCGCCGGTA 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570225822967680