Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2449 134 1e-26 seq2044 82.4 7e-11 >seq2449 Length=712056 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||||||||| ||| | || ||||| ||||| ||| | ||| Sbjct 481698 ATGCAGATTTTCGTGAAGACTCTGACCGGGAAGACAATCACTCTGGAAGTAGAAGCATCC 481639 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || ||||| ||||| ||||| || || || |||||| Sbjct 481638 GACACAATTGAGAATGTCAAGGCGAAGATTCAGGACAAGGAAGGAATTCCTCCAGATCAA 481579 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||||| ||||| | || || || || | ||||| | ||| |||| || |||||||| Sbjct 481578 CAGCGGTTAATCTTTGCTGGAAAGCAGCTCGAAGA-TGGTCGTACGTTGTCGGATTACAA 481520 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || || | ||| | ||| | ||| | || || || Sbjct 481519 TATCCAGAAGGAATCAACTCTTCATCTTGTTCTCCGTCTTCGCGGAGG 481472 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || ||| | || || || ||||| || |||| Sbjct 483801 ATGCAAATTTTTGTTAAAACGCTTACTGGAAAGACGATCACCCTCGAAGTTGAGGCGTCT 483742 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || ||||| ||||| || || || || || |||||| Sbjct 483741 GACACCATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCGCCGGATCAA 483682 Query 27108 CAGCGTTTAATATACGCCGG 27127 ||||| || || | ||| || Sbjct 483681 CAGCGGTTGATCTTCGCAGG 483662 >seq2044 Length=4727 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || || || | ||||| || || || ||| | || Sbjct 42 ATGCAAATCTTCGTGAAGACTCTCACGGGGAAAACAATTACCCTCGAGGTTGAAGCCTCG 101 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| || ||||||||||| || || || ||||| ||||| Sbjct 102 GACACAATCGAGAATGTGAAAGCTAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 161 Query 27108 CAGCGTTTAATATACGCCGG 27127 |||||| | || | |||||| Sbjct 162 CAGCGTCTGATCTTCGCCGG 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434853901601280