Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2449 105 5e-18 >seq2449 Length=712056 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || || || || || || |||||||| ||||| || | | Sbjct 481699 AATGCAGATTTTCGTGAAGACTCTGACCGGGAAGACAATCACTCTGGAAGTAGAAGCATC 481640 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | || | || ||||| ||||| | || ||||||| Sbjct 481639 CGACACAATTGAGAATGTCAAGGCGAAGA-TTCAGGACAAGGAAGGAATTCCTCCAGATC 481581 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||||| ||||| ||||| || || || || ||||| | || || || ||||||| Sbjct 481580 AACAGCGGTTAATCTTTGCTGGAAAGCAGCTCGAAGATGGTCGTACGTTGTCGGATTACA 481521 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | || || || || || || | ||| | ||| | | | || |||||| Sbjct 481520 ATATCCAGAAGGAATCAACTCTTCATCTTGTTCTCCGTCTTCGCGGAGGA 481471 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| ||||| |||||||| || || ||||| |||||||| ||||||||||| | Sbjct 483804 AAAATGCAAATTTTTGTTAAAACGCTTACTGGAAAGACGATCACCCTCGAAGTTGAGGCG 483745 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || | || ||||| || || | ||||| || Sbjct 483744 TCTGACACCATTGAGAATGTGAAGGCGAAGA-TTCAGGACAAGGAGGGAATCCCGCCGGA 483686 Query 23727 TCAACAGCGTTTAATATTTGCCGG 23750 ||||||||| || || || || || Sbjct 483685 TCAACAGCGGTTGATCTTCGCAGG 483662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337960726346912