Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2449 149 1e-30 seq2122 107 5e-18 seq2044 84.2 5e-11 >seq2449 Length=712056 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || ||||| || ||||| ||||| || |||| ||||||||| | ||| || Sbjct 481478 CGAAGACGGAGAACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGACAACGTA 481537 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| ||||| ||||| | || ||||| || || ||||| ||| Sbjct 481538 CGACCATCTTCGAGCTGCTTTCCAGCAAAGATTAACCGCTGTTGATCTGGAGGAATTCCT 481597 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||| ||| || || ||||| || | ||| || || | Sbjct 481598 TCCTTGTCCTGAATCTTCGCCTTGACATTCTCAATTGTGTCGGATGCTTCTACTTCCAGA 481657 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || |||| ||| || | ||| | |||||| Sbjct 481658 GTGATTGTCTTCCCGGTCAGAGTCTTCACGAAAATCTGCATT 481699 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || || | |||||| ||||| || ||||| ||||| ||||||||||| ||| || Sbjct 483289 CCTGCAAAAATCAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGAT-TTTGGC 483347 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 |||||| ||||| ||||| || | ||| || || | |||||| || || ||||| | Sbjct 483348 TTTCACATTCTCGATTGTGTCAGATGCTTCGACTTCGAGCGTGATGGTTTTCCCCGTAAG 483407 Query 225693 AGTTTTTATGAACACTTGCAT 225713 || |||| || | |||||| Sbjct 483408 GGTCTTTACAAAAATTTGCAT 483428 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | || ||||| || ||||| || || |||||||| || ||||| | Sbjct 483662 CCTGCGAAGATCAACCGCTGTTGATCCGGCGGGATTCCCTCCTTGTCCTGAATCTTCGCC 483721 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| || |||||||| || | || || || | ||||||||||| || || | Sbjct 483722 TTCACATTCTCAATGGTGTCAGACGCCTCAACTTCGAGGGTGATCGTCTTTCCAGTAAGC 483781 Query 225694 GTTTTTATGAACACTTGCATTTT 225716 ||||| | || | ||||||||| Sbjct 483782 GTTTTAACAAAAATTTGCATTTT 483804 >seq2122 Length=189064 Score = 107 bits (118), Expect = 5e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || |||||||||||||| || |||||||| ||||| || || || |||||||| Sbjct 94362 GAAGATCTGTCCATCAGTAATAGAAATCACATTTGTGGGGATGTACGCGGACACATCACC 94421 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAA 4576 ||||| ||||||| ||||| | || ||||| ||||||||||||| Sbjct 94422 AGCTTGAGTTTCGATTACAGGGAGAGCAGTTAGGGATCCACCACCAA 94468 >seq2044 Length=4727 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| || || || || || || || || || ||||||||||| ||||| Sbjct 181 CCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTAGCT 122 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||| ||||| |||| ||| || || | || || || || ||||| | | Sbjct 121 TTCACATTCTCGATTGTGTCCGAGGCTTCAACCTCGAGGGTAATTGTTTTCCCCGTGAGA 62 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | ||| | ||||||| Sbjct 61 GTCTTCACGAAGATTTGCATT 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192349926313616