Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2044 114 3e-20 seq2449 113 9e-20 >seq2044 Length=4727 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| ||||||| ||| || || || || || |||||||||||||| ||||| ||| Sbjct 181 CCGGCGAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTAGCT 122 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| |||||||| ||||| || ||||| || || || || ||||| | | Sbjct 121 TTCACATTCTCGATTGTGTCCGAGGCTTCAACCTCGAGGGTAATTGTTTTCCCCGTGAGA 62 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| ||||| || |||||| Sbjct 61 GTCTTCACGAAGATTTGCATT 41 >seq2449 Length=712056 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| ||||| ||||| ||||| ||||| || || ||||||||||| || ||| Sbjct 483289 CCTGCAAAAATCAATCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATTTTGGCT 483348 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| || |||||||||||||| ||||| || || ||||| | Sbjct 483349 TTCACATTCTCGATTGTGTCAGATGCTTCGACTTCGAGCGTGATGGTTTTCCCCGTAAGG 483408 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| || || || ||||| Sbjct 483409 GTCTTTACAAAAATTTGCAT 483428 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || |||||||| || ||||| || ||| || ||||||||||| || ||||| || Sbjct 483662 CCTGCGAAGATCAACCGCTGTTGATCCGGCGGGATTCCCTCCTTGTCCTGAATCTTCGCC 483721 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || ||||| || || || |||||||| ||||||||||| || || | Sbjct 483722 TTCACATTCTCAATGGTGTCAGACGCCTCAACTTCGAGGGTGATCGTCTTTCCAGTAAGC 483781 Query 283080 GTCTTAACGAATATCTGCATTTT 283102 || ||||| || || |||||||| Sbjct 483782 GTTTTAACAAAAATTTGCATTTT 483804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046580087791056