Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Necator_20americanus_20[refseq_20GCF_5F000507365.1_202013-12-20] 11,864 sequences; 244,075,060 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2449 152 1e-31 seq2044 134 3e-26 >seq2449 Length=712056 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||||| || || || || ||||| || || || ||| || ||| Sbjct 481695 CAGATTTTCGTGAAGACTCTGACCGGGAAGACAATCACTCTGGAAGTAGAAGCATCCGAC 481636 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| ||||| |||||||||||||| |||||||| ||||| || || || Sbjct 481635 ACAATTGAGAATGTCAAGGCGAAGATTCAGGACAAGGAAGGAATTCCTCCAGATCAACAG 481576 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| |||||||||||||| | || | | ||||| || || Sbjct 481575 CGGTTAATCTTTGCTGGAAAGCAGCTCGAAGATGGTCGTACGTTGTCGGATTACAATATC 481516 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || |||||||| || ||||||||| Sbjct 481515 CAGAAGGAATCAACTCTTCATCTTGTT 481489 Score = 113 bits (124), Expect = 1e-19 Identities = 113/146 (77%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| ||||||| || ||||| || || ||||| |||||||||||||| || || Sbjct 483804 AAAATGC---AAATTTTTGTTAAAACGCTTACTGGAAAGACGATCACCCTCGAAGTTGAG 483748 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||||||| ||||| || || |||||||||||||| || |||||||| ||| Sbjct 483747 GCGTCTGACACCATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCGCCG 483688 Query 178035 GACCAGCAACGACTTATCTTCGCCGG 178060 || || || || | |||||||| || Sbjct 483687 GATCAACAGCGGTTGATCTTCGCAGG 483662 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || ||||| ||||| ||||| || ||| || ||| Sbjct 483425 CAAATTTTTGTAAAGACCCTTACGGGGAAAACCATCACGCTCGAAGTCGAAGCATCTGAC 483366 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| || || || |||||||||||||| ||||| ||||||||| Sbjct 483365 ACAATCGAGAATGTGAAAGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAGCAA 483306 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | || || || || Sbjct 483305 CGATTGATTTTTGCAGG 483289 >seq2044 Length=4727 Score = 134 bits (148), Expect = 3e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| |||||||| || ||||| || ||||||||||| ||| ||| ||| Sbjct 45 CAAATCTTCGTGAAGACTCTCACGGGGAAAACAATTACCCTCGAGGTTGAAGCCTCGGAC 104 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| |||||||| ||||| || |||||||| || || ||||| Sbjct 105 ACAATCGAGAATGTGAAAGCTAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAGCAG 164 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||||||||| Sbjct 165 CGTCTGATCTTCGCCGG 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203548223829616