Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2779 93.3 4e-14 seq28266 82.4 8e-11 seq7726 82.4 8e-11 >seq2779 Length=25375 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||||||||||||||||||| |||| || || ||| | Sbjct 20905 AATGCAAATCTTCGTGAAGACTCTCACGGGCAAAACCATCACCCTCGAGGTGGAGGCCTC 20846 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | |||||| || || | || || ||||| ||||| | || || Sbjct 20845 CGACACGATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATCCCTCCAGATCA 20786 Query 40809 GCAACGACTCATCTACGCGGG 40829 ||| ||| | |||| ||| || Sbjct 20785 GCAGCGATTGATCTTCGCCGG 20765 >seq28266 Length=552 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| ||||| || |||||||||||| | || |||||||| | Sbjct 184 AATGCAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAAGTCGAAGCTTC 243 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || || | |||| | || |||| ||||| || || ||||| | || | Sbjct 244 GGACACGATTGAGAATG-TCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCTGATC 302 Query 40808 AGCAACGACTCATCTACGCGGG 40829 ||||| || | |||| ||| || Sbjct 303 AGCAAAGATTGATCTTCGCTGG 324 >seq7726 Length=8395 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| ||||| || |||||||||||| | || |||||||| | Sbjct 3792 AATGCAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAAGTCGAAGCTTC 3851 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || || | |||| | || |||| ||||| || || ||||| | || | Sbjct 3852 GGACACGATTGAGAATG-TCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCTGATC 3910 Query 40808 AGCAACGACTCATCTACGCGGG 40829 ||||| || | |||| ||| || Sbjct 3911 AGCAAAGATTGATCTTCGCTGG 3932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515030017950000