Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7726 105 1e-17 seq17 91.5 2e-13 >seq7726 Length=8395 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 |||||||| || || ||||||| ||||||||||||||||| || | ||| | ||||| Sbjct 2305 ACAATGCAGATTTTCGTAAAGACGCTAACAGGCAAAACTATTACCCTCGAGGTGGAAGCT 2364 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||| ||| ||| | ||| ||||||||||| || || || || ||||| ||| Sbjct 2365 TCTGATACCATTGAGAATGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGAT 2424 Query 124656 CAACAAAGGCTTATTTTTGCAGG 124678 || ||||| || || || ||||| Sbjct 2425 CAGCAAAGACTGATCTTCGCAGG 2447 >seq17 Length=262609 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | |||||| | || || ||||| ||||| | ||| | || || Sbjct 68285 AATGCAGATTTTTGTCAAGACATTGACTGGGAAAACAATAACGTTGGAGGTGGAGGCGTC 68344 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| ||| ||||| || |||||||||||||| ||||| || |||||||| | Sbjct 68345 GGACACCATTGAGAATGTTAAAGCA-AAAATTCAAGATAAGGAAGGAATTCCACCTGACC 68403 Query 124657 AACAAAGGCTTATTTTTGCAGG 124678 |||| |||| |||||||| || Sbjct 68404 AACAGCGGCTCATTTTTGCTGG 68425 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || ||||| || || || || || || | ||| ||||||| Sbjct 68001 AATGCAAATTTTTGTGAAAACACTCACTGGAAAGACCATCACGCTTGAGGTTGAAGCGTC 68060 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| ||||| ||| || ||||| || || || ||||||||||| || Sbjct 68061 TGACACGATTGAAAATGTAAAAGCGAAGATCCAAGACAAGGAGGGAATACCACCTGACCA 68120 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 || | || ||||||||||| Sbjct 68121 GCAGCGACTCATTTTTGCAGG 68141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755178606000000