Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq17 100 2e-16 seq7726 89.7 4e-13 seq12672 84.2 2e-11 seq2624 84.2 2e-11 >seq17 Length=262609 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| ||||||||||||||||||| || || || || ||||||||| || || Sbjct 68747 CCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCC 68688 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||||||||||||| ||| ||||| | || | ||| || |||||||| Sbjct 68687 TTGACATTTTCGACGGTGTCCGAAGCCTCCACCTCAAGCGTGATCGTCTTTCCGGTCAGG 68628 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || ||||| |||||||| Sbjct 68627 GTCTTCACAAAGATCTGCAT 68608 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 ||||||| | ||||||||| || || || || ||||||||| || || || || | Sbjct 66452 AGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGACTTTACGT 66393 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 ||||| ||||| | | || || |||| || | |||||| ||||| |||||||| | Sbjct 66392 TTTCGATTGTGTCGGAGGCTTCAACTTCGAGTGTGATCGTTTTCCCGGTGAGAGTTTTCA 66333 Query 118726 CAAAAATCTGCAT 118738 | ||||||||||| Sbjct 66332 CGAAAATCTGCAT 66320 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| | ||||| ||||| || || || || || || ||||| ||| ||||||| | Sbjct 68425 CCAGCAAAAATGAGCCGCTGTTGGTCAGGTGGAATTCCTTCCTTATCTTGAATTTTTGCT 68366 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 ||||| | || | |||||||| ||| ||||| | || | ||||| || |||| Sbjct 68365 TTAACATTCTCAATGGTGTCCGACGCCTCCACCTCCAACGTTATTGTTTTCCCAGTCAAT 68306 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || |||||||||||||| Sbjct 68305 GTCTTGACAAAAATCTGCAT 68286 >seq7726 Length=8395 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| |||| || | ||||||||||| || || |||||||||||| |||||| | Sbjct 2447 CCTGCGAAGATCAGTCTTTGCTGATCGGGTGGGATTCCCTCCTTGTCTTGAATTTTAGCT 2388 Query 118659 TTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | || | ||| || | ||| || ||||||| ||| | |||||||| || || Sbjct 2387 TTCACATTCTCAATGGTATCAGAAGCT-TCCACCTCGAGGGTAATAGTTTTGCCTGTTAG 2329 Query 118718 AGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||||||||| Sbjct 2328 CGTCTTTACGAAAATCTGCAT 2308 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| |||| | ||||||||||| || || || || |||||||| || ||| Sbjct 4527 CCAGCAAAGATCAATCGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTTGCC 4468 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 ||||| | ||||| || || | | ||| ||||||| ||| | ||| || || || || Sbjct 4467 TTAACATTTTCGATCGTATCGGAGGCCTCAACCTCGAGGGTGATCGTCTTTCCTGTGAGG 4408 Query 118719 GTTTTTACAAAAATCTGCATGGCT 118742 ||||| || |||||||||||| || Sbjct 4407 GTTTTGACGAAAATCTGCATGCCT 4384 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| |||| | ||||||||||| || || || || |||||||| || ||| Sbjct 3043 CCGGCGAAGATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 2984 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||||| | ||||| |||||||| ||| || || |||| || | ||||| ||||| || Sbjct 2983 TTAACATTTTCGATGGTGTCCGACGCT-TCAACTTCGAGAGTGATGGTTTTTCCGGTGAG 2925 Query 118718 AGTTTTTACAAAAATCTGCATG 118739 || || ||||| ||||||||| Sbjct 2924 GGTCTTGACAAAGATCTGCATG 2903 >seq12672 Length=3626 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673 |||||||||||||| || || || ||||||||| || ||| ||| || | ||| || Sbjct 2873 CGCTGCTGATCGGGCGGAATCCCTTCCTTGTCTTGAACTTTCAATTTCACATTTTCCACA 2932 Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733 ||||| | |||||| |||| || | || || ||||| |||||||| || |||| | Sbjct 2933 GTGTCGACGGGCTCGACTTCGAGTGTGATAGTCTTTCCGGTGAGAGTTTTGACGAAAACC 2992 Query 118734 TGCATGGCT 118742 |||||| || Sbjct 2993 TGCATGACT 3001 >seq2624 Length=26635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673 |||||||||||||| || || || ||||||||| || ||| ||| || | ||| || Sbjct 21730 CGCTGCTGATCGGGCGGAATCCCTTCCTTGTCTTGAACTTTCAATTTCACATTTTCCACA 21789 Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733 ||||| | ||||| |||| || | || || ||||| |||||||| ||||||| | Sbjct 21790 GTGTCGACGGGCTCGAGTTCGAGTGTGATTGTCTTTCCGGTGAGAGTTTTGACAAAAACC 21849 Query 118734 TGCATGGCT 118742 |||||| || Sbjct 21850 TGCATGACT 21858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433675085327500