Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq8891 91.5 2e-13 seq2643 91.5 2e-13 seq3590 89.7 6e-13 seq896 89.7 6e-13 seq34 89.7 6e-13 seq16 89.7 6e-13 seq2779 87.8 2e-12 seq640 87.8 2e-12 seq357 87.8 2e-12 seq6034 86.0 7e-12 seq4098 86.0 7e-12 seq1410 86.0 7e-12 seq1087 86.0 7e-12 seq1060 86.0 7e-12 seq698 86.0 7e-12 seq44 86.0 7e-12 seq1251 82.4 9e-11 >seq8891 Length=6795 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 139 ATGCAAAAAGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 80 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 79 TACTCACCACTATACTACCGAGGAT 55 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 5664 ATGCAAAAACTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 5723 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 5724 TACTCACCACTATACTACCGAGGA 5747 >seq2643 Length=26495 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 |||| |||||| || |||| |||| |||||| |||||| |||||| | ||||||| || Sbjct 6380 TTTACGAAAAAGTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGC 6322 Query 60111 ACATACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||||||| Sbjct 6321 GGATACTCACCACTATACTACCGAGGA 6295 >seq3590 Length=20069 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| |||||| |||| |||||| |||||| |||||| | ||||||| || || Sbjct 19267 TGCAAAAACTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGAT 19208 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 19207 ACTCACCACTATACTACCGAGGAT 19184 >seq896 Length=62165 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| |||||| |||| |||||| |||||| |||||| | ||||||| || || Sbjct 25166 TGTAAAAAATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGAT 25225 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 25226 ACTCACCACTATACTACCGAGGAT 25249 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 28276 AAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 28217 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 28216 CACCACTATACTACCGAGGA 28197 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 28448 AAAAAGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 28389 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 28388 CACCACTATACTACCGAGGA 28369 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 28661 AAAACATCCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 28602 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 28601 CACCACTATACTACCGAGGA 28582 >seq34 Length=219156 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 158621 ATGCAAAACGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 158680 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 158681 TACTCACCACTATACTACCGAGGA 158704 >seq16 Length=266949 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 59137 ATGCAAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 59078 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 59077 TACTCACCACTATACTACCGAGGA 59054 >seq2779 Length=25375 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 43042 TACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTT 43101 |||| ||||| || | ||||||||| || | || | | |||||| ||| ||| || Sbjct 20763 TACCGGCGAAGATCAATCGCTGCTGATCTGGAGGGATACCCTCCTTATCCTGGATCTTGG 20822 Query 43102 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 43161 |||| || | | ||||||| | ||||| |||| ||||||||||||||||| | Sbjct 20823 CCTTGACATTCTCGATCGTGTCGGAGGCCTCCACCTCGAGGGTGATGGTTTTGCCCGTGA 20882 Query 43162 GCGTCTTTACAAAGATTTGCATT 43184 | ||||| || |||||||||||| Sbjct 20883 GAGTCTTCACGAAGATTTGCATT 20905 >seq640 Length=76182 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 70944 AAAAAACTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 70885 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 70884 TCACCACTATACTACCGAGGA 70864 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 72343 AAAAAACTTCTCCGCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 72402 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 72403 TCACCACTATACTACCGAGGA 72423 >seq357 Length=102278 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 23056 AAAAGGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 22997 Query 60118 CACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||| Sbjct 22996 CACCACTATACTACCGAGGAT 22976 >seq6034 Length=11602 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 6829 AAAAACTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 6888 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 6889 CACCACTATACTACCGAGGA 6908 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 7252 AAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 7311 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 7312 CACCACTATACTACCGAGGA 7331 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 8169 AAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 8228 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 8229 CACCACTATACTACCGAGGA 8248 >seq4098 Length=17681 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 2707 AAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 2766 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 2767 CACCACTATACTACCGAGGA 2786 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||| |||||| |||| |||| |||||| |||||| | ||||||| || ||||| Sbjct 90 AAAATATTCTCCCCGGCCAAGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 31 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 30 CACCACTATACTACCGAGGA 11 >seq1410 Length=44684 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 30330 AAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 30271 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 30270 CACCACTATACTACCGAGGA 30251 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 31255 AAAAACTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 31196 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 31195 CACCACTATACTACCGAGGA 31176 >seq1087 Length=54718 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 39086 AAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 39145 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 39146 CACCACTATACTACCGAGGA 39165 >seq1060 Length=55655 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| | |||| |||||| |||||||| ||||||| || ||||||||||| Sbjct 43518 TTCTCCGCGGCCGAGAATTGAACCCGGGTCTCCCATGTGACAGACGCGGATACTCACCAC 43459 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 43458 TATACTACCGAGGAT 43444 >seq698 Length=72703 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 44772 AAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 44831 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 44832 CACCACTATACTACCGAGGA 44851 >seq44 Length=199398 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 97075 AAAACATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 97134 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 97135 CACCACTATACTACCGAGGA 97154 >seq1251 Length=48640 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/81 (84%), Gaps = 4/81 (5%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| ||||||| |||| |||||| |||||| |||||| || ||| ||||| |||| Sbjct 48610 AAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCGACAGAC--GCGGA--TACT 48555 Query 60118 CACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||| Sbjct 48554 CACCACTATACTACCGAGGAT 48534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571607635725000