Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq636 131 1e-25 seq20723 89.7 5e-13 seq7726 89.7 5e-13 >seq636 Length=76548 Score = 131 bits (144), Expect = 1e-25 Identities = 180/250 (72%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || | ||| |||||||||||||| | || | |||||||| ||||||||||| || Sbjct 21171 TCGAAAATGTCAGCATGCCACGGCTCCAAATAGATCGCAAACGCTCCCGGTCTCTTGTTA 21230 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 ||||||||||| || ||||| || ||||| ||||| || | ||||| || | |||||| Sbjct 21231 CCGCCCTGATCCACATAACGAGCAGTGTTATTGTAGACGCGAAGCATAGGAATCAGACCG 21290 Query 23561 TTGGACGCGCCGCCTACG--CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 ||||| | |||| | || || || | ||| || | || |||| || ||||| | Sbjct 21291 TTGGAGGTGCCG--TTCGTTCCGGCAATTAACGATCCCGTGGCACGAATCTTATGAACAT 21348 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | || ||||||||| | ||||| |||| || || || |||| ||||| |||| Sbjct 21349 TTAGGCCGATGCCTCCGGCACTCTTCGAGATCAGGGCACACTGCTTCAACGTGTCATAGA 21408 Query 23679 TGCCCTCGAT 23688 | || |||| Sbjct 21409 TTCCAGCGAT 21418 >seq20723 Length=1367 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| |||| |||||| | || Sbjct 322 CATGCAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTC 381 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||||| |||||| || || |||||||||||| | || || || || Sbjct 382 CGACACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCA 441 Query 31312 GCAGCGTCTAATATTCGCTGGCAA 31335 ||| || | || || ||||| || Sbjct 442 GCAACGATTGATCTTTGCTGGTAA 465 >seq7726 Length=8395 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| |||| |||||| | || Sbjct 4685 CATGCAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTC 4744 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||||| |||||| || || |||||||||||| | || || || || Sbjct 4745 CGACACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCA 4804 Query 31312 GCAGCGTCTAATATTCGCTGGCAA 31335 ||| || | || || ||||| || Sbjct 4805 GCAACGATTGATCTTTGCTGGTAA 4828 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| || || || ||||| || ||||||||| |||| ||||| | || Sbjct 4387 CATGCAGATTTTCGTCAAAACCCTCACAGGAAAGACGATCACCCTCGAGGTTGAGGCCTC 4446 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||| | |||||| || || || ||| | |||||||||||| | || || || | Sbjct 4447 CGATACGATCGAAAATGTTAAGGCAAAGA-TCCAGGACAAGGAAGGAATCCCACCAGATC 4505 Query 31311 AGCAGCGTCTAATATTCGCTGG 31332 ||||||| | || || ||||| Sbjct 4506 AGCAGCGATTGATCTTTGCTGG 4527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445602720150000