Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq636 105 8e-18 >seq636 Length=76548 Score = 105 bits (116), Expect = 8e-18 Identities = 187/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 ||| |||| ||||||||| ||||| || || || | |||| || | ||||| || || Sbjct 21176 AATGTCAGCATGCCACGGCTCCAAATAGATCGCAAACGCTCCCGGTCTCTTGTTACCGCC 21235 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 |||||| | || | ||| |||||||| || || | | ||| ||||| | |||||| || Sbjct 21236 CTGATCCACATAACGAGCAGTGTTATTGTAGACGCGAAGCATAGGAATCAGACCGTTGGA 21295 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 | || || || |||| || | ||| |||||||||| ||| || ||| || Sbjct 21296 GGTGCCGTTCGTTCCGGCAATTAACGATCCCGTGGCACGAATCTTATGAACATTTAGGCC 21355 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 || || || || | || ||||| | || || | || |||||||||||||| || | Sbjct 21356 GATGCCTCCGGCACTCTTCGAGATCAGGGCACACTGCTTCAACGTGTCATAGATTCCAGC 21415 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACA 63640 || ||| || ||||| | || || || || Sbjct 21416 GATCGAATCCTCACTCATGGTCAGCAGGAAGCA 21448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629586338850000