Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq20723 86.0 6e-12 seq7726 86.0 6e-12 seq17 86.0 6e-12 >seq20723 Length=1367 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| |||||| ||||||||||| || || || ||||| ||||| ||| | || Sbjct 465 TTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTC-CTGAATCTT 407 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||| | | ||| | |||||||| | || || || | ||| | ||||| ||||| Sbjct 406 CGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGT 347 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||| || |||||||| ||||| Sbjct 346 GAGCGTCTTCACGAATATCTGCAT 323 >seq7726 Length=8395 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| |||||| ||||||||||| || || || ||||| ||||| ||| | || Sbjct 4828 TTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTC-CTGAATCTT 4770 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||| | | ||| | |||||||| | || || || | ||| | ||||| ||||| Sbjct 4769 CGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGT 4710 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||| || |||||||| ||||| Sbjct 4709 GAGCGTCTTCACGAATATCTGCAT 4686 >seq17 Length=262609 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||||||| |||| ||||| |||||||| || || || ||||| ||||| ||| || Sbjct 68749 TACCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGG 68690 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 || | | ||| || ||||| | | ||||||||||| || | |||||| ||||||| Sbjct 68689 CCTTGACATTTTCGACGGTGTCCGAAGCCTCCACCTCAAGCGTGATCGTCTTTCCGGTCA 68630 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 || || || || || ||||| Sbjct 68629 GGGTCTTCACAAAGATCTGCAT 68608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495881851500000