Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq636 96.9 5e-15 >seq636 Length=76548 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 78969 AATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTC 79028 ||| ||||| | | ||| || | | ||| || ||||| |||| ||| || ||| ||| Sbjct 18565 AATTGATCCGCTGTTTGCGATCAGCTGATTTTTCATCTCATCATCCCACAAGTTTAACTC 18624 Query 79029 GGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCG 79088 | || | | || ||||||||||| || | ||| || || ||||| | ||||| || Sbjct 18625 GACCAAGTCCTTCAGCAGATGCGGATTGACAATTTGGAAGTCACCAGAAAGCACTCTTCG 18684 Query 79089 AGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGT 79148 | |||| || || || || || || | || || || || || | ||||||||| || Sbjct 18685 ACTGTAGATGTTCGAAGTGTAAGGCTCAATGGACTCGTTGTTGCCGAGAATTTGAGCGGT 18744 Query 79149 TGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184 || ||||||||||| || ||||| | ||||| || Sbjct 18745 GGACGCCGTTGGCATTGGGGCCACTAGCAAACTGTT 18780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718005060675000