Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq17 122 2e-22 seq20723 100 7e-16 seq7726 100 7e-16 seq28266 96.9 8e-15 >seq17 Length=262609 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || || | |||||| || ||||| |||||||| |||||||| ||||| || Sbjct 66742 CCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGGATCTTCGCC 66683 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||||| || |||||| || || ||||||||||| || ||||| Sbjct 66682 TTCACATTTTCAATAGTATCAGAAGCTTCTACTTCCAGCGTAATAGTCTTTCCGGTAAGA 66623 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| Sbjct 66622 GTTTTGACGAAAATTTGCAT 66603 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | ||| || ||||| |||||||| || || || || ||||| ||| Sbjct 68141 CCTGCAAAAATGAGTCGCTGCTGGTCAGGTGGTATTCCCTCCTTGTCTTGGATCTTCGCT 68082 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | || || | ||| ||||| || || || ||||| ||||| ||| Sbjct 68081 TTTACATTTTCAATCGTGTCAGACGCTTCAACCTCAAGCGTGATGGTCTTTCCAGTGAGT 68022 Query 104540 GTTTTTACAAATATCTGCATT 104560 ||||| ||||| || |||||| Sbjct 68021 GTTTTCACAAAAATTTGCATT 68001 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| |||| |||||| ||||| || |||||||| ||||| ||||| |||||| Sbjct 68425 CCAGCAAAAATGAGCCGCTGTTGGTCAGGTGGAATTCCTTCCTTATCTTGAATTTTTGCT 68366 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||| || | || ||||| | || || || || ||||| | | Sbjct 68365 TTAACATTCTCAATGGTGTCCGACGCCTCCACCTCCAACGTTATTGTTTTCCCAGTCAAT 68306 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| ||||||||| Sbjct 68305 GTCTTGACAAAAATCTGCATT 68285 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || || | ||| ||||| || || || ||||| || || || ||||| || Sbjct 66161 CCTGCAAAGATGAGTCGCTGCTGATCCGGTGGAATACCTTCCTTGTCTTGGATCTTAGCC 66102 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | || || | ||| ||||| || || |||||||| |||||||| Sbjct 66101 TTTACATTTTCAATCGTGTCAGAGGCTTCAACCTCAAGCGTGATAGTCTTTCCAGTAAGG 66042 Query 104540 GTTTTTACAAATATCTGCATT 104560 ||||| ||||| || |||||| Sbjct 66041 GTTTTCACAAAAATTTGCATT 66021 >seq20723 Length=1367 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | | || ||||| || || |||||||| || ||||||||||| Sbjct 465 TTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTC 406 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | || ||| || ||| || || || || || ||||| || || Sbjct 405 GCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGTG 346 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||||||||| Sbjct 345 AGCGTCTTCACGAATATCTGCAT 323 >seq7726 Length=8395 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | | || ||||| || || |||||||| || ||||||||||| Sbjct 4828 TTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTC 4769 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | || ||| || ||| || || || || || ||||| || || Sbjct 4768 GCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGTG 4709 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||||||||| Sbjct 4708 AGCGTCTTCACGAATATCTGCAT 4686 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || || | || || |||||||| || |||||||| || ||||||||||| ||| Sbjct 3932 CCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCT 3873 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | || || || ||| || || || || || || || ||||| || Sbjct 3872 TTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAGG 3813 Query 104540 GTTTTTACAAATATCTGCATT 104560 ||||| || || ||||||||| Sbjct 3812 GTTTTCACGAAGATCTGCATT 3792 >seq28266 Length=552 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || || | || || |||||||| || |||||||| || ||||||||||| ||| Sbjct 324 CCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCT 265 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | || || || ||| || || || || || || || ||||| || Sbjct 264 TTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAGG 205 Query 104540 GTTTTTACAAATATCTGCATT 104560 ||||| || || ||||||||| Sbjct 204 GTTTTCACGAAGATCTGCATT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150965051422500