Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq17 100 3e-16 seq28266 98.7 9e-16 seq7726 98.7 9e-16 seq20723 87.8 2e-12 seq2779 86.0 6e-12 >seq17 Length=262609 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || |||||||| || ||||||||||| ||||| | || || ||||| | Sbjct 66157 CAAAGATGAGTCGCTGCTGATCCGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTTA 66098 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | ||||||| | || || |||| |||||| || ||||||||||| |||| Sbjct 66097 CATTTTCAATCGTGTCAGAGGCTTCAACCTCAAGCGTGATAGTCTTTCCAGTAAGGGTTT 66038 Query 94992 TCACAAAGATCTGCATGCTT 95011 ||||||| || ||||| ||| Sbjct 66037 TCACAAAAATTTGCATTCTT 66018 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | | ||||||||||| ||||| ||||| ||||| | || || ||||||| Sbjct 68743 CAAAGATGAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCCTTGA 68684 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | |||| ||||| | || || |||| |||||| || ||||| || || || | Sbjct 68683 CATTTTCGACGGTGTCCGAAGCCTCCACCTCAAGCGTGATCGTCTTTCCGGTCAGGGTCT 68624 Query 94992 TCACAAAGATCTGCAT 95007 |||||||||||||||| Sbjct 68623 TCACAAAGATCTGCAT 68608 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| | ||| ||||||||||| ||||| ||||| ||||| | || || | | Sbjct 66459 CCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGAC 66400 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || ||| ||| ||||| | | || || || | ||||| ||||| || || ||| Sbjct 66399 TTTACGTTTTCGATTGTGTCGGAGGCTTCAACTTCGAGTGTGATCGTTTTCCCGGTGAGA 66340 Query 94988 GTTTTCACAAAGATCTGCAT 95007 |||||||| || |||||||| Sbjct 66339 GTTTTCACGAAAATCTGCAT 66320 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| |||||||| || ||||| | ||| ||||| || ||| | | |||| Sbjct 67077 TGCTGATCTGGCGGAATACCCTCCTTGTCCTGAATCTTTGCTTTCACGTTCTCAATAGTG 67018 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | ||||| |||| ||||||||| ||||| || ||||| || ||||| || ||| Sbjct 67017 TCCGATGCTTCGACTTCAAGCGTGATGGTCTTTCCCGTTAGAGTCTTGACAAAAATTTGC 66958 Query 95006 AT 95007 || Sbjct 66957 AT 66956 >seq28266 Length=552 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| |||||||||||||| || || || ||||| ||||| | ||| || || ||||| Sbjct 318 AAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCTTTGACA 259 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | ||||| | ||||| |||| ||||||||||| ||||| || |||||| Sbjct 258 TTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAGGGTTTTC 199 Query 94994 ACAAAGATCTGCAT 95007 || ||||||||||| Sbjct 198 ACGAAGATCTGCAT 185 >seq7726 Length=8395 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| |||||||||||||| || || || ||||| ||||| | ||| || || ||||| Sbjct 3926 AAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCTTTGACA 3867 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | ||||| | ||||| |||| ||||||||||| ||||| || |||||| Sbjct 3866 TTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAGGGTTTTC 3807 Query 94994 ACAAAGATCTGCAT 95007 || ||||||||||| Sbjct 3806 ACGAAGATCTGCAT 3793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| | ||||| |||| ||||||||||| ||||| ||||| ||||| | || |||||| Sbjct 3043 CCGGCGAAGATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 2984 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || ||| ||||| | || || || | |||||||||||||| || || Sbjct 2983 TTAACATTTTCGATGGTGTCCGACGCTTCAACTTCGAGAGTGATGGTTTTTCCGGTGAGG 2924 Query 94988 GTTTTCACAAAGATCTGCATGC 95009 || || |||||||||||||||| Sbjct 2923 GTCTTGACAAAGATCTGCATGC 2902 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| | ||||| || | ||||||||||| ||||||||||| ||||| | || || || Sbjct 3340 CCGGCGAAGATCAACCGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATCTTAGCT 3281 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || ||| ||||| | | || || |||| ||||||||| ||||| || || Sbjct 3280 TTCACATTTTCGATCGTGTCGGAGGCCTCAACTTCAAGCGTGATGGTCTTTCCTGTGAGG 3221 Query 94988 GTTTTCACAAAGATCTGCATGC 95009 || ||||| ||||||||||||| Sbjct 3220 GTCTTCACGAAGATCTGCATGC 3199 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| || | |||||||||||| || || ||||| ||||| | || || || Sbjct 4231 CCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCT 4172 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 ||||| | | ||||| | ||||| |||| ||||||||||| ||||| || Sbjct 4171 TTGACATTCTCAATCGTGTCCGAAGCTTCGACCTCAAGGGTGATGGTTTTCCCAGTGAGG 4112 Query 94988 GTTTTCACAAAGATCTGCAT 95007 |||||||| ||||||||||| Sbjct 4111 GTTTTCACGAAGATCTGCAT 4092 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| |||| |||||||||||| || || ||||| ||||| | ||| || || |||| Sbjct 4821 CAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTCGCTTTGA 4762 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| ||||| | || || || | |||||||| ||||| || || || | Sbjct 4761 CATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGTGAGCGTCT 4702 Query 94992 TCACAAAGATCTGCATGC 95009 |||| || |||||||||| Sbjct 4701 TCACGAATATCTGCATGC 4684 >seq20723 Length=1367 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| |||| |||||||||||| || || ||||| ||||| | ||| || || |||| Sbjct 458 CAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTCGCTTTGA 399 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| ||||| | || || || | |||||||| ||||| || || || | Sbjct 398 CATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGTGAGCGTCT 339 Query 94992 TCACAAAGATCTGCATGC 95009 |||| || |||||||||| Sbjct 338 TCACGAATATCTGCATGC 321 >seq2779 Length=25375 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| | ||||| |||| |||||||||||||| ||||| || || || | || || ||| Sbjct 20765 CCGGCGAAGATCAATCGCTGCTGATCTGGAGGGATACCCTCCTTATCCTGGATCTTGGCC 20824 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 ||||| ||| ||||| | | || || || | ||||||||||| || || ||| Sbjct 20825 TTGACATTCTCGATCGTGTCGGAGGCCTCCACCTCGAGGGTGATGGTTTTGCCCGTGAGA 20884 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| ||||| Sbjct 20885 GTCTTCACGAAGATTTGCAT 20904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448126593075000