Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6036 178 2e-40 seq1075 95.1 2e-15 >seq6036 Length=11601 Score = 178 bits (196), Expect = 2e-40 Identities = 198/262 (76%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | | || || || ||||||||||||||||||||||| || | Sbjct 1287 CGCCAAGCGCCATCGCA-AGGTGTTGCGTGACAACATCCAAGGAATCACCAAGCCGGCCA 1229 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||| ||||||||||| |||||| || || | |||| || |||| Sbjct 1228 TCCGTCGTCTCGCTCGCCGTGGTGGAGTGAAGCGTATCAGCGGTCTCATCTACGAGGAGA 1169 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | ||| | ||||| ||| ||| |||| |||||| || ||| || Sbjct 1168 CCCGTGGTGTCCTCAAGGTGTTCCTTGAGAACGTCATCCGTGATGCCGTCACCTACTGCG 1109 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| ||||||| ||||||| || | || ||||||| Sbjct 1108 AGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTCAAGCGTCAAG 1049 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | |||| | || ||||| || Sbjct 1048 GACGTACTCTGTACGGTTTCGG 1027 >seq1075 Length=55251 Score = 95.1 bits (104), Expect = 2e-15 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 |||| || ||| | | ||||| || || ||||||||||| ||||||| |||||| ||| Sbjct 21756 AACAACCGCGGACTGTCAAAGCCGGCCATTCGTCGTCTGGCCCGTCGTGCTGGAGTGAAG 21815 Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATC-TTCCTCAAGAC 16581 || |||| || || |||| || ||| | || || ||| || | || |||||| | Sbjct 21816 CGCATCTCCGGCTTCATCTACGAGGAGGTGCGCGACGTTCTG-CGCTCATTCCTCCGATC 21874 Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCA--CGCTAAACGTAAGACTGTCACCTCC 16639 ||| || || |||||| || || ||| || ||| || | | || |||||| || Sbjct 21875 CGTCATACAAGATGCTGTCATTTACTGCGAACATTCGCGAA--GAACAACCGTCACCACC 21932 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||||| |||| || || | ||||| | ||| | | || |||||||||||| Sbjct 21933 ATGGACGTCGTTTACGCCCTCAAACGCCGAGGACACACAATCTATGGTTTTGGA 21986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79048342231875