Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq636 105 8e-18 >seq636 Length=76548 Score = 105 bits (116), Expect = 8e-18 Identities = 187/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 ||| |||| ||||||||| ||||| || || || | |||| || | ||||| || || Sbjct 21176 AATGTCAGCATGCCACGGCTCCAAATAGATCGCAAACGCTCCCGGTCTCTTGTTACCGCC 21235 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 |||||| | || | ||| |||||||| || || | | ||| ||||| | |||||| || Sbjct 21236 CTGATCCACATAACGAGCAGTGTTATTGTAGACGCGAAGCATAGGAATCAGACCGTTGGA 21295 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496 | || || || |||| || | ||| |||||||||| ||| || ||| || Sbjct 21296 GGTGCCGTTCGTTCCGGCAATTAACGATCCCGTGGCACGAATCTTATGAACATTTAGGCC 21355 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 || || || || | || ||||| | || || | || |||||||||||||| || | Sbjct 21356 GATGCCTCCGGCACTCTTCGAGATCAGGGCACACTGCTTCAACGTGTCATAGATTCCAGC 21415 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACA 63589 || ||| || ||||| | || || || || Sbjct 21416 GATCGAATCCTCACTCATGGTCAGCAGGAAGCA 21448 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 62246 AATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTC 62305 ||| ||||| | | ||| || | | ||| || |||||||||| ||| || ||| ||| Sbjct 18565 AATTGATCCGCTGTTTGCGATCAGCTGATTTTTCATCTCATCATCCCACAAGTTTAACTC 18624 Query 62306 GGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCG 62365 | || | | || ||||||||||| || | ||| || || ||||| | ||||| || Sbjct 18625 GACCAAGTCCTTCAGCAGATGCGGATTGACAATTTGGAAGTCACCAGAAAGCACTCTTCG 18684 Query 62366 AGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGT 62425 | |||| || || || || || || | ||||| || || || | ||||||||| || Sbjct 18685 ACTGTAGATGTTCGAAGTGTAAGGCTCAATGGACTCGTTGTTGCCGAGAATTTGAGCGGT 18744 Query 62426 TGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62461 || || || ||||| || ||||| | ||||| || Sbjct 18745 GGACGCCGTTGGCATTGGGGCCACTAGCAAACTGTT 18780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622718461575000