Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014
-09-26] 29,375 sequences; 294,400,206 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq8689 113 3e-20
seq577 95.1 8e-15
seq10982 84.2 1e-11
>seq8689
Length=7062
Score = 113 bits (124), Expect = 3e-20
Identities = 76/85 (89%), Gaps = 5/85 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 22 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 81
Query 25957 TAATCCTTTCATGCGCGTCACTAAT 25981
|||||| ||||||||||||| ||||
Sbjct 82 TAATCCATTCATGCGCGTCAGTAAT 106
>seq577
Length=80828
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||
Sbjct 79380 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGC 79439
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||||||
Sbjct 79440 GTCTATATTTAGCCTTA 79456
>seq10982
Length=4712
Score = 84.2 bits (92), Expect = 1e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380
|| ||||| || ||||| |||||| | ||||||||||| | | ||| | |||||||
Sbjct 2948 CCCACGAAGTACTTCGGTTGCGAATTGGGCGCTCAGACAAACTATGACGCGAGAAACGAG 3007
Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440
|| | ||||| ||||| |||| || | || |||||||| || | || || |||||
Sbjct 3008 CGGTATATCGTGAACGGTGAGCATGACGCAGCGAAGCTGCAAGATATCCTGGATGGCTTC 3067
Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486
|| || || || || |||| | ||| || || ||||| ||||
Sbjct 3068 ATCAAGAAATTCGTCCTTTGTCCAGCATGTGAGAATCCGGAAACCG 3113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334827286285625
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |