Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8689 113 3e-20 seq577 95.1 8e-15 seq10982 84.2 1e-11 >seq8689 Length=7062 Score = 113 bits (124), Expect = 3e-20 Identities = 76/85 (89%), Gaps = 5/85 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 22 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 81 Query 25957 TAATCCTTTCATGCGCGTCACTAAT 25981 |||||| ||||||||||||| |||| Sbjct 82 TAATCCATTCATGCGCGTCAGTAAT 106 >seq577 Length=80828 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||| Sbjct 79380 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTCACAGTACTTGTTTGCTATCGAATTCGC 79439 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 79440 GTCTATATTTAGCCTTA 79456 >seq10982 Length=4712 Score = 84.2 bits (92), Expect = 1e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || ||||| || ||||| |||||| | ||||||||||| | | ||| | ||||||| Sbjct 2948 CCCACGAAGTACTTCGGTTGCGAATTGGGCGCTCAGACAAACTATGACGCGAGAAACGAG 3007 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || | ||||| ||||| |||| || | || |||||||| || | || || ||||| Sbjct 3008 CGGTATATCGTGAACGGTGAGCATGACGCAGCGAAGCTGCAAGATATCCTGGATGGCTTC 3067 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 || || || || || |||| | ||| || || ||||| |||| Sbjct 3068 ATCAAGAAATTCGTCCTTTGTCCAGCATGTGAGAATCCGGAAACCG 3113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334827286285625