Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq17 107 2e-18 >seq17 Length=262609 Score = 107 bits (118), Expect = 2e-18 Identities = 112/144 (78%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||| || ||| | || || | || |||||| |||| Sbjct 68285 AATGCAGATTTTTGTCAAGACATTGACTGGGAAAACAATAACGTTGGAGGTGGAGGCGTC 68344 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || ||| | || ||||||||| ||| || || ||||| ||||||||||| Sbjct 68345 GGACACCATTGAG--AATGTTAAAGCAAAAATTCAA-GATAAGGAAGGAATTCCACCTGA 68401 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 |||||||||| | |||||||| || Sbjct 68402 CCAACAGCGGCTCATTTTTGCTGG 68425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433172865190625