Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq17 95.1 1e-14 seq7726 93.3 4e-14 seq12672 91.5 1e-13 seq2624 91.5 1e-13 >seq17 Length=262609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| |||| || || || |||| |||||||| ||| | | Sbjct 66956 ATGCAAATTTTTGTCAAGACTCTAACGGGAAAGACCATCACGCTTGAAGTCGAAGCATCG 67015 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| ||| ||||| ||||||||||||||||| || ||||| Sbjct 67016 GACACTATTGAGAACGTGAAAGCAAAGATTCAGGACAAGGAGGGTATTCCGCCAGATCAG 67075 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || ||||| || || || Sbjct 67076 CAGCGGCTTATCTTCGCAGG 67095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||| | ||||| |||||| |||| || ||||| ||| || || Sbjct 66320 ATGCAGATTTTCGTGAAAACTCTCACCGGGAAAACGATCACACTCGAAGTTGAAGCCTCC 66379 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || ||||||||||| || |||||||| ||||| Sbjct 66380 GACACAATCGAAAACGTAAAGTCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 66439 Query 22339 CAACGTCTTATATTTGCCGG 22358 || | || || |||||||| Sbjct 66440 CAGAGACTCATCTTTGCCGG 66459 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| | || || || || |||| ||||| || ||| || | Sbjct 66022 ATGCAAATTTTTGTGAAAACCCTTACTGGAAAGACTATCACGCTTGAGGTTGAAGCCTCT 66081 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || ||||||||||| ||||||||||| ||||| Sbjct 66082 GACACGATTGAAAATGTAAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCGGATCAG 66141 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || || || ||||| || Sbjct 66142 CAGCGACTCATCTTTGCAGG 66161 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || ||| |||| ||||| ||||| | | Sbjct 68608 ATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACGATCACGCTTGAGGTGGAGGCTTCG 68667 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||||| || || |||| || || ||||||||||| || ||||| || ||||| Sbjct 68668 GACACCGTCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGATCAG 68727 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||||| || ||||| || Sbjct 68728 CAGCGTCTCATCTTTGCTGG 68747 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || || || ||||| | || | || ||||| | | Sbjct 68286 ATGCAGATTTTTGTCAAGACATTGACTGGGAAAACAATAACGTTGGAGGTGGAGGCGTCG 68345 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| |||||||||||| ||||| || |||||||| || ||| Sbjct 68346 GACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAGGAAGGAATTCCACCTGACCAA 68405 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || || || ||||| || Sbjct 68406 CAGCGGCTCATTTTTGCTGG 68425 >seq7726 Length=8395 Score = 93.3 bits (102), Expect = 4e-14 Identities = 112/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 22208 CATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAG 22267 |||||| | | ||||| ||||| || || || |||| || ||||| | || || || | Sbjct 2298 CATTTGCACA-ATGCAGATTTTCGTAAAGACGCTAACAGGCAAAACTATTACCCTCGAGG 2356 Query 22268 TGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTC 22327 ||||| | | |||||| | || || | ||| |||||||||||||||||||| || | Sbjct 2357 TGGAAGCTTCTGATACCATTGAGAATGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCC 2416 Query 22328 CACCCGATCAACAACGTCTTATATTTGCCGG 22358 |||||||||| ||| | || || || || || Sbjct 2417 CACCCGATCAGCAAAGACTGATCTTCGCAGG 2447 >seq12672 Length=3626 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||| || |||||| | ||||| || || |||| || ||||| || || | Sbjct 2997 ATGCAGGTTTTCGTCAAAACTCTCACCGGAAAGACTATCACACTCGAAGTCGAGCCCGTC 2938 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || ||||| || | ||| ||| ||||||||||||| || ||||| |||||||| Sbjct 2937 GACACTGTGGAAAATGTGAAATTGAAAGTTCAAGACAAGGAAGGGATTCCGCCCGATCAG 2878 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || |||| | |||||| Sbjct 2877 CAGCGAATTATTTATGCCGG 2858 >seq2624 Length=26635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||| |||||| | ||||| || || |||| || ||| | || || | Sbjct 21854 ATGCAGGTTTTTGTCAAAACTCTCACCGGAAAGACAATCACACTCGAACTCGAGCCCGTC 21795 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || ||||| || | ||| ||| ||||||||||||| || ||||| |||||||| Sbjct 21794 GACACTGTGGAAAATGTGAAATTGAAAGTTCAAGACAAGGAAGGGATTCCGCCCGATCAG 21735 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || |||| | |||||| Sbjct 21734 CAGCGAATTATTTATGCCGG 21715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419577734096875