Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq253 102 2e-16 seq6034 100 6e-16 seq1410 100 6e-16 seq1023 100 6e-16 seq40 100 6e-16 seq15560 98.7 2e-15 seq1785 98.7 2e-15 seq1508 98.7 2e-15 seq241 98.7 2e-15 seq9414 96.9 7e-15 seq2819 96.9 7e-15 seq3841 93.3 9e-14 seq11893 91.5 3e-13 seq516 89.7 1e-12 >seq253 Length=117909 Score = 102 bits (112), Expect = 2e-16 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 142496 GTGAGATA-GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTG 142554 |||||| | ||||||||||||||||||||||||| | ||||||||||||| | |||| | Sbjct 92012 GTGAGACAAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCG 91953 Query 142555 GGTTCGAGCCCCACATCGGGC 142575 |||||||||||| |||||||| Sbjct 91952 GGTTCGAGCCCCGCATCGGGC 91932 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 91812 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 91753 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 91752 CCCGCATCGGGC 91741 >seq6034 Length=11602 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 10404 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 10345 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 10344 CCCCGCATCGGGC 10332 >seq1410 Length=44684 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 28324 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 28383 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 28384 CCCCGCATCGGGC 28396 >seq1023 Length=57160 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 29333 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 29392 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 29393 CCCCGCATCGGGC 29405 >seq40 Length=206247 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 62782 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 62841 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 62842 CCCCGCATCGGGC 62854 >seq15560 Length=2371 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 668 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 727 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 728 CCCGCATCGGGC 739 >seq1785 Length=37433 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 16507 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 16566 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 16567 CCCGCATCGGGC 16578 >seq1508 Length=42825 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 19621 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 19680 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 19681 CCCGCATCGGGC 19692 >seq241 Length=121265 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 72906 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 72847 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 72846 CCCGCATCGGGC 72835 >seq9414 Length=6157 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||| ||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 1164 AGCCCGGTGAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 1223 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 1224 CCCCGCATCGGGC 1236 >seq2819 Length=25062 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 217813 GCTGGCACCAAAAACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCC 217872 ||||| || || || || ||||||||||| ||||| || |||||||| ||||| Sbjct 19552 GCTGGAACGAAGAATTCGCAGCTCTGCACTCTAATCCTTACCGAGGGAGATTCAGCCAAA 19493 Query 217873 ACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTC 217932 ||| |||| | ||||||| || || |||||||| |||||||| | ||||| || Sbjct 19492 ACGTTGGCTGTATCCGGTCTTGGAGTTGTCGGTCGTGATAGGTATGGAGTGTTCCCGCTT 19433 Query 217933 CGTGGTAAGCTGCTCAACGTGCGCGA 217958 |||||||| ||||| || || ||||| Sbjct 19432 CGTGGTAAACTGCTGAATGTTCGCGA 19407 >seq3841 Length=18809 Score = 93.3 bits (102), Expect = 9e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 217813 GCTGGCACCAAAAACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCC 217872 ||||| || || || || ||||||||||| ||||| || |||||||| ||||| Sbjct 11787 GCTGGAACGAAGAATTCACAACTCTGCACTCTAATCCTTACCGAGGGAGATTCAGCCAAA 11728 Query 217873 ACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTC 217932 || |||| |||| |||| || || |||||||| |||||||| | ||||| || Sbjct 11727 ACTTTGGCTGTATCTGGCCTTGGAGTTGTCGGTCGTGATAGGTATGGAGTGTTCCCGCTT 11668 Query 217933 CGTGGTAAGCTGCTCAACGTGCGCGA 217958 |||||||| ||||| || || ||||| Sbjct 11667 CGTGGTAAACTGCTGAATGTCCGCGA 11642 >seq11893 Length=4115 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||||||||| | ||||||||||||| | |||| |||| |||| Sbjct 126 AGCCCGATTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTGCGAG 67 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 66 CCCCGCATCGGGC 54 >seq516 Length=86560 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||| | | | || |||||||||| Sbjct 64080 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATTTGGCTGCCGCGGGTTCGAGC 64021 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 64020 CCCGCATCGGGC 64009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027449955954375