Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq17 84.2 2e-11 >seq17 Length=262609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 114242 ACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTG 114301 ||| || ||||||| | ||| || || || ||||| ||||| ||||| ||||| Sbjct 66460 ACCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGA 66401 Query 114302 TTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAG 114361 |||| | ||| | ||||||| || ||| || || | || | |||||| ||||| || Sbjct 66400 CTTTACGTTTTCGATTGTGTCGGAGGCTTCAACTTCGAGTGTGATCGTTTTCCCGGTGAG 66341 Query 114362 AGTTTTTACAAAAATCTGCAT 114382 |||||| || ||||||||||| Sbjct 66340 AGTTTTCACGAAAATCTGCAT 66320 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 114242 ACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTG 114301 |||||| ||||||| ||||||||||| |||||||| ||||| || || ||||| Sbjct 66743 ACCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGGATCTTCGC 66684 Query 114302 TTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAG 114361 || | | ||||| || || | | ||| || |||| || | || || ||||| || Sbjct 66683 CTTCACATTTTCAATAGTATCAGAAGCTTCTACTTCCAGCGTAATAGTCTTTCCGGTAAG 66624 Query 114362 AGTTTTTACAAAAATCTGCATGGCT 114386 |||||| || ||||| |||||| || Sbjct 66623 AGTTTTGACGAAAATTTGCATGCCT 66599 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 114242 ACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTG 114301 |||||| | ||||| ||||||||||| || ||||| ||||| || || ||| ||||| Sbjct 68426 ACCAGCAAAAATGAGCCGCTGTTGGTCAGGTGGAATTCCTTCCTTATCTTGAAT-TTTTG 68368 Query 114302 TTTTAGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 |||| | | |||| |||||| | | || || |||| || | ||||| || |||| Sbjct 68367 CTTTAACATTCTCAATGGTGTCCGACGCCTCCACCTCCAACGTTATTGTTTTCCCAGTCA 68308 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 || || |||||||||||||| Sbjct 68307 ATGTCTTGACAAAAATCTGCAT 68286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419983988602500