Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq17 114 3e-20 seq20723 111 4e-19 seq7726 111 4e-19 seq3841 100 7e-16 seq2819 89.7 1e-12 seq28266 84.2 5e-11 >seq17 Length=262609 Score = 114 bits (126), Expect = 3e-20 Identities = 112/143 (78%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| || |||||||| ||||| |||||||| ||||||||||| ||| Sbjct 66742 CCAGCAAAGATGAGTCGCTGTTGG---TCTGGAGGAATTCCTTCCTTATCCTGGATCTTC 66686 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||| ||||| |||| ||| | ||||||||| ||||| || ||||| ||||| Sbjct 66685 GCCTTCACATTTTCAATAGTATCAGAAGCTTCTACTTCCAGCGTAATAGTCTTTCCGGTA 66626 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||||| || ||||| Sbjct 66625 AGAGTTTTGACGAAAATTTGCAT 66603 Score = 98.7 bits (108), Expect = 2e-15 Identities = 109/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 ||||||||||| || ||||| ||| ||||| || || || || ||||| || || Sbjct 67095 CCTGCGAAGATAAGCCGCTGCTGA---TCTGGCGGAATACCCTCCTTGTCCTGAATCTTT 67039 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||||||| || |||| || | ||| ||||| |||||||| ||||| || || Sbjct 67038 GCTTTCACGTTCTCAATAGTGTCCGATGCTTCGACTTCAAGCGTGATGGTCTTTCCCGTT 66979 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||||||||| || || |||||| Sbjct 66978 AGAGTCTTGACAAAAATTTGCATT 66955 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| |||||||| ||| |||||| || ||||| || || ||||| || Sbjct 68747 CCAGCAAAGATGAGACGCTGCTGA---TCTGGGGGAATCCCTTCCTTGTCTTGGATCTTG 68691 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || ||||| | | || | || || || |||||||||||||| |||||| Sbjct 68690 GCCTTGACATTTTCGACGGTGTCCGAAGCCTCCACCTCAAGCGTGATCGTCTTTCCGGTC 68631 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || ||||| || || ||||||||| Sbjct 68630 AGGGTCTTCACAAAGATCTGCATT 68607 >seq20723 Length=1367 Score = 111 bits (122), Expect = 4e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 |||| || || || ||||||| || || ||| |||||||||||| || ||||| Sbjct 471 AATTACTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGA 412 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || |||||||| || ||||| || | ||| | ||| |||||||| ||||| ||||| Sbjct 411 ATCTTCGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTT 352 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| |||||||||||||| Sbjct 351 CCGGTGAGCGTCTTCACGAATATCTGCAT 323 >seq7726 Length=8395 Score = 111 bits (122), Expect = 4e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 |||| || || || ||||||| || || ||| |||||||||||| || ||||| Sbjct 4834 AATTACTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGA 4775 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || |||||||| || ||||| || | ||| | ||| |||||||| ||||| ||||| Sbjct 4774 ATCTTCGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTT 4715 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| |||||||||||||| Sbjct 4714 CCGGTGAGCGTCTTCACGAATATCTGCAT 4686 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||||||||| ||||| || |||||||||||| || |||||||| || Sbjct 2747 TTACCTGCGAAGATCAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTA 2688 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| ||||| || || | || | || || || || ||||| ||||||||||| Sbjct 2687 GCTTTAACGTTCTCAATGGTGTCTGAAGCCTCAACCTCAAGTGTGATAGTCTTCCCGGTG 2628 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||| || ||||| Sbjct 2627 AGAGTCTTGACGAAGATTTGCAT 2605 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| |||| || |||||| ||| |||||||| || |||||||| || || Sbjct 3636 CCAGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCC 3577 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | ||| | || |||||||||||||| ||||| ||||| || Sbjct 3576 TTGACATTTTCGATTGTGTCGGAGGCCTCAACTTCGAGCGTGATGGTCTTTCCGGTGAGG 3517 Query 288454 GTCTTGACGAATATCTGCAT 288473 |||||||| || |||||||| Sbjct 3516 GTCTTGACAAAAATCTGCAT 3497 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||||| ||||| ||| |||||||||||| || |||||||| || || Sbjct 4527 CCAGCAAAGATCAATCGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTTGCC 4468 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | |||| | || || ||||| ||||||||||| || || || Sbjct 4467 TTAACATTTTCGATCGTATCGGAGGCCTCAACCTCGAGGGTGATCGTCTTTCCTGTGAGG 4408 Query 288454 GTCTTGACGAATATCTGCAT 288473 || |||||||| |||||||| Sbjct 4407 GTTTTGACGAAAATCTGCAT 4388 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 |||||||||||||| | || ||| ||||||||| || || || || ||||| ||| Sbjct 2447 CCTGCGAAGATCAGTCTTTGCTGATCGGGTGGGATTCCCTCCTTGTCTTGAATTTTAGCT 2388 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | ||| | ||| || ||||| || || || || || || || Sbjct 2387 TTCACATTCTCAATGGTATCAGAAGCTTCCACCTCGAGGGTAATAGTTTTGCCTGTTAGC 2328 Query 288454 GTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| ||||||||| || Sbjct 2327 GTCTTTACGAAAATCTGCATTGTG 2304 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| | || ||| | |||||||||||| || ||||| || || ||| Sbjct 3932 CCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCT 3873 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | || | ||| ||||| || ||||| || ||||| || || Sbjct 3872 TTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAGG 3813 Query 288454 GTCTTGACGAATATCTGCATT 288474 || || ||||| ||||||||| Sbjct 3812 GTTTTCACGAAGATCTGCATT 3792 >seq3841 Length=18809 Score = 100 bits (110), Expect = 7e-16 Identities = 130/178 (73%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 326207 TCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACC 326266 |||||||| |||| ||||| |||||||| |||||||||||||| || || |||||||| Sbjct 11642 TCGCGGACATTCAGCAGTTTACCACGAAGCGGGAACACTCCATACCTATCACGACCGACA 11701 Query 326267 ACGGACAGCCCTGCGATTGC--AAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAG 326324 || || || | | || |||| | | || ||||| ||||| || || || |||| Sbjct 11702 ACTCCAAGGCCAGATACAGCCAAAGTTTTG--GCTGAATCTCCCTCGGTAAGGATTAGAG 11759 Query 326325 TGCACATTTTGCTGTTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTGGGAATTCC 326382 |||| | || || ||||||||||| ||||||| | || ||||||||||| Sbjct 11760 TGCAGAGTTGTGAATTCTTCGTTCCAGCGTCGTTAGCATCCTCTAGCTTGGGAATTCC 11817 >seq2819 Length=25062 Score = 89.7 bits (98), Expect = 1e-12 Identities = 128/180 (71%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 326207 TCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACC 326266 ||||| || |||| ||||| |||||||| |||||||||||||| || || |||||||| Sbjct 19407 TCGCGAACATTCAGCAGTTTACCACGAAGCGGGAACACTCCATACCTATCACGACCGACA 19466 Query 326267 ACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTG 326326 || || || | | || | || || ||||| ||||| || || || |||||| Sbjct 19467 ACTCCAAGACCGGATACAGCCAACGTTTTGGCTGAATCTCCCTCGGTAAGGATTAGAGTG 19526 Query 326327 CACATTTTGCTG----TTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTGGGAATTCC 326382 || | |||| || ||||||||||| ||||||| | || ||||||||||| Sbjct 19527 CAGA----GCTGCGAATTCTTCGTTCCAGCGTCGTTAGCATCCTCTAGCTTGGGAATTCC 19582 >seq28266 Length=552 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| | || ||| | |||||||||||| || ||||| || || ||| Sbjct 324 CCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCT 265 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | || | ||| ||||| || ||||| || ||||| || || Sbjct 264 TTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAGG 205 Query 288454 GTCTTGACGAATATCTGCATT 288474 || || ||||| ||||||||| Sbjct 204 GTTTTCACGAAGATCTGCATT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179210416791250