Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3841 104 5e-17 seq2819 93.3 9e-14 >seq3841 Length=18809 Score = 104 bits (114), Expect = 5e-17 Identities = 131/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 298328 TCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACC 298387 ||||||||||||| ||||| |||||||| |||||||||||||| || || |||||||| Sbjct 11642 TCGCGGACATTCAGCAGTTTACCACGAAGCGGGAACACTCCATACCTATCACGACCGACA 11701 Query 298388 ACGGACAGCCCTGCGATTGC--AAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAG 298445 || || || | | || |||| | | || ||||| ||||| || || || |||| Sbjct 11702 ACTCCAAGGCCAGATACAGCCAAAGTTTTG--GCTGAATCTCCCTCGGTAAGGATTAGAG 11759 Query 298446 TGCACATTTTGCTGTTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTGGGAATTCC 298503 |||| | || || ||||||||||| ||||||| | || ||||||||||| Sbjct 11760 TGCAGAGTTGTGAATTCTTCGTTCCAGCGTCGTTAGCATCCTCTAGCTTGGGAATTCC 11817 >seq2819 Length=25062 Score = 93.3 bits (102), Expect = 9e-14 Identities = 129/180 (72%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 298328 TCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACC 298387 ||||| ||||||| ||||| |||||||| |||||||||||||| || || |||||||| Sbjct 19407 TCGCGAACATTCAGCAGTTTACCACGAAGCGGGAACACTCCATACCTATCACGACCGACA 19466 Query 298388 ACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTG 298447 || || || | | || | || || ||||| ||||| || || || |||||| Sbjct 19467 ACTCCAAGACCGGATACAGCCAACGTTTTGGCTGAATCTCCCTCGGTAAGGATTAGAGTG 19526 Query 298448 CACATTTTGCTG----TTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTGGGAATTCC 298503 || | |||| || ||||||||||| ||||||| | || ||||||||||| Sbjct 19527 CAGA----GCTGCGAATTCTTCGTTCCAGCGTCGTTAGCATCCTCTAGCTTGGGAATTCC 19582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102464912156250