Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2779 87.8 2e-12 seq8891 82.4 8e-11 seq4098 82.4 8e-11 seq2643 82.4 8e-11 >seq2779 Length=25375 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126 |||| ||||| || | ||||||||| || | || | | |||||| ||| ||| || Sbjct 20763 TACCGGCGAAGATCAATCGCTGCTGATCTGGAGGGATACCCTCCTTATCCTGGATCTTGG 20822 Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186 |||| || | | ||||||| | ||||| |||| ||||||||||||||||| | Sbjct 20823 CCTTGACATTCTCGATCGTGTCGGAGGCCTCCACCTCGAGGGTGATGGTTTTGCCCGTGA 20882 Query 42187 GCGTCTTTACAAAGATTTGCATT 42209 | ||||| || |||||||||||| Sbjct 20883 GAGTCTTCACGAAGATTTGCATT 20905 >seq8891 Length=6795 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||| |||| |||||| |||| | ||| |||||| |||||| | ||||||| || | Sbjct 139 ATGCAAAAAGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 80 Query 57055 TACTCACCACTATACTACCGAGGAT 57079 ||||||||||||||||||||||||| Sbjct 79 TACTCACCACTATACTACCGAGGAT 55 >seq4098 Length=17681 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||||| |||||| |||| | ||| |||||| |||||| | ||||||| || ||||| Sbjct 90 AAAATATTCTCCCCGGCCAAGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 31 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||||||| Sbjct 30 CACCACTATACTACCGAGGA 11 >seq2643 Length=26495 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 |||| |||||| || |||| |||| | ||| |||||| |||||| | ||||||| || Sbjct 6380 TTTACGAAAAAGTT-CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGC 6322 Query 57052 ACATACTCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||||||| Sbjct 6321 GGATACTCACCACTATACTACCGAGGA 6295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543013339050000