Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq17 91.5 1e-13 seq12672 86.0 6e-12 >seq17 Length=262609 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| | ||||| ||||| ||||| |||||||||||||| || || || || || | Sbjct 66742 CCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGGATCTTCGCC 66683 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| || | |||||| || || ||||| | || | ||||| ||||| | | Sbjct 66682 TTCACATTTTCAATAGTATCAGAAGCTTCTACTTCCAGCGTAATAGTCTTTCCGGTAAGA 66623 Query 64424 GTTTTTACGAAAATTTGCAT 64443 ||||| |||||||||||||| Sbjct 66622 GTTTTGACGAAAATTTGCAT 66603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| ||||||||||||| ||||| || ||||||||||| || ||||| | ||||||| Sbjct 68425 CCAGCAAAAATGAGCCGCTGTTGGTCAGGTGGAATTCCTTCCTTATCTTG-AATTTTTGC 68367 Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 ||| ||| ||| | || || || ||||| || | |||| || || || ||||| Sbjct 68366 TTTAACATTCTCAATGGTGTCCGACGCCTCCACCTCCAACGTTATTGTTTTCCCAGTCAA 68307 Query 64423 AGTTTTTACGAAAATTTGCATT 64444 || || || ||||| |||||| Sbjct 68306 TGTCTTGACAAAAATCTGCATT 68285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 |||||| | ||||| | |||||| || || ||||||||||| || ||||| || || | Sbjct 66459 CCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGAC 66400 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 ||||| || | ||| || ||| || ||||| | || | || || ||||| | | Sbjct 66399 TTTACGTTTTCGATTGTGTCGGAGGCTTCAACTTCGAGTGTGATCGTTTTCCCGGTGAGA 66340 Query 64424 GTTTTTACGAAAATTTGCATT 64444 ||||| |||||||| |||||| Sbjct 66339 GTTTTCACGAAAATCTGCATT 66319 >seq12672 Length=3626 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 ||||||||||| | |||||||| ||||| ||||| ||||| || ||||| | ||| Sbjct 2858 CCGGCATAAATAATTCGCTGCTGATCGGGCGGAATCCCTTCCTTGTCTTGAACTTTCAAT 2917 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| ||||| || || ||| || ||||| | || | ||||| ||||| | | Sbjct 2918 TTCACATTTTCCACAGTGTCGACGGGCTCGACTTCGAGTGTGATAGTCTTTCCGGTGAGA 2977 Query 64424 GTTTTTACGAAAATTTGCAT 64443 ||||| ||||||| ||||| Sbjct 2978 GTTTTGACGAAAACCTGCAT 2997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499461336675000