Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq17 91.5 1e-13 seq636 87.8 2e-12 >seq17 Length=262609 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT 138543 || || ||||||||||| || || || ||||| || || ||| |||||| ||||| | Sbjct 68416 ATGAGCCGCTGTTGGTCAGGTGGAATTCCTTCCTTATCT-TGAATTTTTGCTTTAACATT 68358 Query 138544 -TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||| | || ||||||||| | ||| | ||||| ||||||| || || || Sbjct 68357 CTCAATGGTGTCCGACGCCTCCACCTCCAACGTTATTGTTTTCCCAGTCAATGTCTTGAC 68298 Query 138603 AAAAATCTGCAT 138614 |||||||||||| Sbjct 68297 AAAAATCTGCAT 68286 >seq636 Length=76548 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 154361 GCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGC 154420 |||||||| ||||||||| ||||| | |||||||| || || ||||| || | || Sbjct 21590 GCTCATCAAATTGTACGTTTCAATGGCTGCATCGATATCCTCACCATGAATTCCAATGGC 21649 Query 154421 GACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 || |||||||||||||||||||| |||||||| || Sbjct 21650 AACTCGCATGAGCATGTGCTGCGGGCGTTCGGCTAC 21685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496080178650000