Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7726 100 3e-16 seq20723 93.3 4e-14 seq2779 91.5 1e-13 seq17 91.5 1e-13 >seq7726 Length=8395 Score = 100 bits (110), Expect = 3e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| ||||||||||||||||||| || || || || ||||||||| ||| || | Sbjct 3043 CCGGCGAAGATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 2984 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTC-TCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 || | | ||||| |||||||| || | || ||||||| || | ||||| ||||| || Sbjct 2983 TTAACATTTTCGATGGTGTCCG-ACGCTTCAACTTCGAGAGTGATGGTTTTTCCGGTGAG 2925 Query 127093 AGTTTTTACAAAAATCTGCATG 127114 || || ||||| ||||||||| Sbjct 2924 GGTCTTGACAAAGATCTGCATG 2903 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 ||||| ||||||||||||||||||| || || || || ||||||||| ||| || | Sbjct 4527 CCAGCAAAGATCAATCGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTTGCC 4468 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | ||||| || || | ||| || |||| ||| | ||| || || || || Sbjct 4467 TTAACATTTTCGATCGTATCGGAGGCCTCAACCTCGAGGGTGATCGTCTTTCCTGTGAGG 4408 Query 127094 GTTTTTACAAAAATCTGCATGGCT 127117 ||||| || |||||||||||| || Sbjct 4407 GTTTTGACGAAAATCTGCATGCCT 4384 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| | |||||||| || ||||| || || || || ||||||||| ||| || | Sbjct 3636 CCAGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCC 3577 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | ||||| ||||| | ||| ||||||| || | || || ||||| || Sbjct 3576 TTGACATTTTCGATTGTGTCGGAGGCCTCAACTTCGAGCGTGATGGTCTTTCCGGTGAGG 3517 Query 127094 GTTTTTACAAAAATCTGCATG 127114 || || ||||||||||||||| Sbjct 3516 GTCTTGACAAAAATCTGCATG 3496 >seq20723 Length=1367 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| ||||||||||||||||||| || || || |||||||||||| ||| || | Sbjct 166 CCGGCGAAGATCAATCGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCC 107 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | ||||| || || | ||| || |||| ||| | || || || || || Sbjct 106 TTGACATTTTCGATTGTATCGGAGGCCTCAACCTCGAGGGTGATTGTCTTTCCTGTGAGG 47 Query 127094 GTTTTTACAAAAATCTGCATGGCT 127117 ||||| || |||||||||||| || Sbjct 46 GTTTTGACGAAAATCTGCATGCCT 23 >seq2779 Length=25375 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| ||||||||||||||||||| ||||| || |||||||| ||| ||| || | Sbjct 20765 CCGGCGAAGATCAATCGCTGCTGATCTGGAGGGATACCCTCCTTATCCTGGATCTTGGCC 20824 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | |||| ||||| | ||| || |||| ||| | |||||||| || ||| Sbjct 20825 TTGACATTCTCGATCGTGTCGGAGGCCTCCACCTCGAGGGTGATGGTTTTGCCCGTGAGA 20884 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| Sbjct 20885 GTCTTCACGAAGATTTGCAT 20904 >seq17 Length=262609 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 ||||| |||| | ||||||||||| || || || || |||||||| ||| || | Sbjct 68747 CCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCC 68688 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | |||||||||||||| | ||| || || | || | ||| || |||||||| Sbjct 68687 TTGACATTTTCGACGGTGTCCGAAGCCTCCACCTCAAGCGTGATCGTCTTTCCGGTCAGG 68628 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || ||||| |||||||| Sbjct 68627 GTCTTCACAAAGATCTGCAT 68608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475326202050000