Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq12672 86.0 6e-12 seq7726 86.0 6e-12 seq20723 82.4 7e-11 >seq12672 Length=3626 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || || || || | ||| ||||| || |||||||| ||||| || ||||||| ||| | Sbjct 2858 CCGGCATAAATAATTCGCTGCTGATCGGGCGGAATCCCTTCCTTGTCTTGAACTTTCAAT 2917 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | ||| || |||||| | |||||||||||| || | || || ||||| ||| Sbjct 2918 TTCACATTTTCCACAGTGTCGACGGGCTCGACTTCGAGTGTGATAGTCTTTCCGGTGAGA 2977 Query 45321 GTTTTTACAAAAATTTGCAT 45340 ||||| || |||| ||||| Sbjct 2978 GTTTTGACGAAAACCTGCAT 2997 >seq7726 Length=8395 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | |||| || |||||| || || || || || || || ||||||||||| | Sbjct 2447 CCTGCGAAGATCAGTCTTTGCTGATCGGGTGGGATTCCCTCCTTGTCTTGAATTTTAGCT 2388 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | || | ||| || |||| || || ||||| |||| |||||||| ||||| Sbjct 2387 TTCACATTCTCAATGGTATCAGAAGCTTCCACCTCGAGGGTAATAGTTTTGCCTGTTAGC 2328 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| ||||| Sbjct 2327 GTCTTTACGAAAATCTGCAT 2308 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | |||||||| ||||| || || ||||| ||||| || || || || ||| Sbjct 3043 CCGGCGAAGATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 2984 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | ||| | |||||| || | || ||||||||||| | ||||| ||||| || Sbjct 2983 TTAACATTTTCGATGGTGTCCGACGCTTCAACTTCGAGAGTGATGGTTTTTCCGGTGAGG 2924 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || ||||| || ||||| Sbjct 2923 GTCTTGACAAAGATCTGCAT 2904 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | ||||||||||| || || || ||||| ||||| || || || || || Sbjct 3636 CCAGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCC 3577 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| ||| | |||||||| | ||| |||||||| || | || || ||||| || Sbjct 3576 TTGACATTTTCGATTGTGTCGGAGGCCTCAACTTCGAGCGTGATGGTCTTTCCGGTGAGG 3517 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || |||||||| ||||| Sbjct 3516 GTCTTGACAAAAATCTGCAT 3497 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || || | |||||||||||||| || || || || ||||| || || || Sbjct 4835 CAATTACTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 4776 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || ||||| ||| | |||||||||| || |||||||| || | || || Sbjct 4775 AATCTTCGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTT 4716 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || || || ||||| Sbjct 4715 TCCGGTGAGCGTCTTCACGAATATCTGCAT 4686 >seq20723 Length=1367 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || || | |||||||||||||| || || || || ||||| || || || Sbjct 472 CAATTACTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 413 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || ||||| ||| | |||||||||| || |||||||| || | || || Sbjct 412 AATCTTCGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTT 353 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || || || ||||| Sbjct 352 TCCGGTGAGCGTCTTCACGAATATCTGCAT 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451837230075000