Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq20723 91.5 3e-13 seq7726 91.5 3e-13 seq17 89.7 1e-12 >seq20723 Length=1367 Score = 91.5 bits (100), Expect = 3e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 200947 GGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACT 201006 |||||||| | ||||||||| | || ||||||||||||||| ||||||| || |||||| Sbjct 528 GGAAAGCAACTCGAAGATGGACGCACATTGGCCGATTACAACATCCAGAAGGAATCTACT 587 Query 201007 CTTCACCTTGTTTTGAGACTTCG 201029 |||||||||||| | | ||||| Sbjct 588 CTTCACCTTGTTCTCCGCCTTCG 610 >seq7726 Length=8395 Score = 91.5 bits (100), Expect = 3e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 200947 GGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACT 201006 |||||||| | ||||||||| | || ||||||||||||||| ||||||| || |||||| Sbjct 4891 GGAAAGCAACTCGAAGATGGACGCACATTGGCCGATTACAACATCCAGAAGGAATCTACT 4950 Query 201007 CTTCACCTTGTTTTGAGACTTCG 201029 |||||||||||| | | ||||| Sbjct 4951 CTTCACCTTGTTCTCCGCCTTCG 4973 >seq17 Length=262609 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || |||||||| || |||||||| || || ||| || || |||||||||||| Sbjct 67095 CCTGCGAAGATAAGCCGCTGCTGATCTGGCGGAATACCCTCCTTGTCCTGAATCTTTGCT 67036 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| || | ||||| | || ||| || || | |||||| ||||| ||||| ||| Sbjct 67035 TTCACGTTCTCAATAGTGTCCGATGCTTCGACTTCAAGCGTGATGGTCTTTCCCGTTAGA 66976 Query 199610 GTTTTCACAAAAATTTG 199626 || || ||||||||||| Sbjct 66975 GTCTTGACAAAAATTTG 66959 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 ||||| |||||||| | |||||| || || ||||||||| || || ||||| | Sbjct 66459 CCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGAC 66400 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || ||| ||||| ||||| | | ||| || || | |||||||| || || |||||| Sbjct 66399 TTTACGTTTTCGATTGTGTCGGAGGCTTCAACTTCGAGTGTGATCGTTTTCCCGGTGAGA 66340 Query 199610 GTTTTCACAAAAATTTG 199626 |||||||| ||||| || Sbjct 66339 GTTTTCACGAAAATCTG 66323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178477892593125