Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq17 100 1e-15 seq7726 96.9 1e-14 seq28266 84.2 9e-11 seq87 84.2 9e-11 >seq17 Length=262609 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || || ||| ||||||| ||||| || || | || || || | || Sbjct 68285 AATGCAGATTTTTGTCAAGACATTGACTGGGAAAACAATAACGTTGGAGGTGGAGGCGTC 68344 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | ||||| ||||||||||||||||||||||||||| ||||| || Sbjct 68345 GGACACCATTGAGAATGTTAAAGCAAAAATTCAAGATAAGGAAGGAATTCCACCTGACCA 68404 Query 391169 ACAACGTTTAATTTT 391183 ||| || | ||||| Sbjct 68405 ACAGCGGCTCATTTT 68419 Score = 91.5 bits (100), Expect = 6e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || || |||||||| || || || ||| | ||| Sbjct 66603 ATGCAAATTTTCGTCAAAACTCTTACCGGAAAGACTATTACGCTGGAAGTAGAAGCTTCT 66662 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || || || || |||||||||||||||||||| || ||| Sbjct 66663 GATACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAAGGAATTCCTCCAGACCAA 66722 Query 391170 CAACG 391174 || || Sbjct 66723 CAGCG 66727 >seq7726 Length=8395 Score = 96.9 bits (106), Expect = 1e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || || || || ||||||||||| || || || ||| | || Sbjct 2307 AATGCAGATTTTCGTAAAGACGCTAACAGGCAAAACTATTACCCTCGAGGTGGAAGCTTC 2366 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| ||||||||||| ||||| ||||| || || ||||| Sbjct 2367 TGATACCATTGAGAATGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGATCA 2426 Query 391169 ACAACGTTTAATTTTCTCAGG 391189 ||| | | || ||| |||| Sbjct 2427 GCAAAGACTGATCTTCGCAGG 2447 Score = 84.2 bits (92), Expect = 9e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| ||||| || ||||| ||||| || || ||||| || ||| | || Sbjct 3792 AATGCAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAAGTCGAAGCTTC 3851 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | | ||| || ||||| || ||||||||||| || |||||||| Sbjct 3852 GGACACGATTGAGAATGTCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCTGATCA 3911 Query 391169 ACAACGTTTAATTTTC 391184 ||| | || || ||| Sbjct 3912 GCAAAGATTGATCTTC 3927 >seq28266 Length=552 Score = 84.2 bits (92), Expect = 9e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| ||||| || ||||| ||||| || || ||||| || ||| | || Sbjct 184 AATGCAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAAGTCGAAGCTTC 243 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | | ||| || ||||| || ||||||||||| || |||||||| Sbjct 244 GGACACGATTGAGAATGTCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCTGATCA 303 Query 391169 ACAACGTTTAATTTTC 391184 ||| | || || ||| Sbjct 304 GCAAAGATTGATCTTC 319 >seq87 Length=164798 Score = 84.2 bits (92), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 450916 AATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGT 450975 ||| ||||||||||| |||||||||| ||||||||| ||||||||| | |||||| || Sbjct 35776 AATCGGAATTGATCTCGGAACCACCTATTCATGTGTCGGTGTTTACAAGAATGGACGGGT 35835 Query 450976 AGAAATTATAGCAAATGACCAAGG 450999 ||||| || || || || ||||| Sbjct 35836 TGAAATCATTGCTAACGATCAAGG 35859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974974804422500