Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq19468 242 5e-59 seq87 159 4e-34 seq199 158 2e-33 >seq19468 Length=1528 Score = 242 bits (268), Expect = 5e-59 Identities = 530/790 (67%), Gaps = 8/790 (1%) Strand=Plus/Plus Query 6953 CCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCA 7012 || || || || || | ||||| | ||| | ||| ||||| || | ||| | || Sbjct 510 CCGAGCGAGAGCGGGGCGACGTCGAGGAGAAGCAGATCTTGCACGGCTTCCGACTTGTCT 569 Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 || | | || ||||| ||||| | || ||||| || || |||||||| ||||| ||| Sbjct 570 CCGGAAAGAATAGCGGCCTGGACAGCTGCTCCGTAGGCAACGGCCTCATCAGGGTTGATC 629 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || |||| ||| || || || ||| || | | | || | |||||||| Sbjct 630 GACTTGTTCAATTCCTTTCCAGAGAACAGATCTGAGAGAAGCTTCTGCACCTTCGGGATA 689 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192 || || ||||| ||||||| ||||| || | || | || || ||||| | ||| Sbjct 690 CGGGTAGATCCTCCGACCAGGACGATGTCGTGTACCTGGCTCTTGTCCATCTTGGCATCT 749 Query 7193 CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCA 7252 | || | || || || || ||||| |||||||||||| ||||| ||||| Sbjct 750 CTCAGAGACTTCTCAACGGGGTCCATGGTCGAACGGAACAAGTCGGCGCACAGCTCCTCG 809 Query 7253 AAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCA 7312 ||||| |||||||| ||| || ||||| || | || ||| | | || || || ||| Sbjct 810 AAACGGGCACGGGTGATGTTAGTGTAGAAGTCGATACCCTCGAAAAGTGAGTCGATCTCA 869 Query 7313 ATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAA 7372 || | | ||| | | ||||||| || ||||| || || || || || || || | | Sbjct 870 ATCGAAGCTTGAGATGAGGAAGATAGAGTACGCTTGGCACGTTCGCATGCGGTACGAAGA 929 Query 7373 CGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCA 7432 || || || ||||| ||||| | | || ||||| || || || || ||||| || Sbjct 930 CGGCGGAGAGCACGAGGGTTGGTGTTCAGGTCCTTCTTGTGCTTGCGCTTGAACTCGGCA 989 Query 7433 GAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCG 7492 |||||| | | || |||||| || || || || | || || || || ||| Sbjct 990 ACGAAGTGGTTGACCATTCGGTTATCGAAGTCCTCTCCTCCGAGATGGGTGTCTCCAGCG 1049 Query 7493 GTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCA 7552 || | || ||||| || || || |||| ||| | | | || ||||| || |||||| Sbjct 1050 GTGGACTTTACTTCGAAAATTCCATCTTCGATGGTCAGGATAGACACATCGAAGGTACCA 1109 Query 7553 CCACCCAGGTCAAAAATGAGTAC-GTTCG-TATC--GTCGTCTTTGTTCTTATCGAGACC 7608 || || || || || ||||| || |||| | || || |||| || ||||| || Sbjct 1110 CCTCCAAGATCGAAGATGAGCACATTTCGCTCTCCGGTACCCTTT----TTGTCGAGTCC 1165 Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAAT 7668 ||| |||||||| || || || || ||||| || ||||| ||| ||| || || ||||| Sbjct 1166 GTAGGCGATAGCAGCGGCAGTAGGCTCATTGATGATACGGAGAACGTTGAGACCGGCAAT 1225 Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728 | | | || || || || ||||| ||||| || ||||| ||||| || || || || || Sbjct 1226 TGCTCCAGCGTCCTTGGTGGCTTGACGTTGGGAGTCGTTGAAGTAAGCTGGCACAGTGAC 1285 Query 7729 GACCGCGTCC 7738 ||| || ||| Sbjct 1286 GACGGCATCC 1295 >seq87 Length=164798 Score = 159 bits (176), Expect = 4e-34 Identities = 179/237 (76%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 ||||| || | ||| || || || || ||||| || || || || || || |||| ||| Sbjct 36702 TTCTTGTCCAAACCATAGGCAATTGCAGCCGCGGTGGGCTCGTTGATGATTCGAACCACA 36643 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || ||||||||||||||| | ||||| ||||| ||||||||||| | ||| |||||||| Sbjct 36642 TTT-AGGCCAGCAATAGTTCCAGCATCCTTCGTGGCTTGTCGTTGAGCATCATTAAAGTA 36584 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 |||||| || || ||||| |||| | || | ||| || ||||| ||||| || || || Sbjct 36583 GGCCGGAACAGTGACGACTGCGTGTTTCACCTCCTTGCCAAGATATGATTCGGCAATTTC 36524 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTC 7830 ||||| || || | ||||| | ||||||||||| | || |||| ||| || || Sbjct 36523 CTTCATCTTCGTCAACACCATTGCAGAAATCTCTTCCGGAGCGAACTCTTTTGTGTC 36467 >seq199 Length=130249 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||||||||||||||| |||||||| || || ||||| || || ||||| || | | Sbjct 24069 TTCTTATCGAGACCGTAGGCGATAGCGGCAGCGGTTGGCTCGTTGATAATTCGCACCACG 24010 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||||||||| ||| | ||||| || || || |||| || | |||||| ||||| Sbjct 24009 TTGAGGCCAGCAATGGTTCCGGCATCCTTGGTAGCCTGTCTCTGGGCATCGTTGAAGTAA 23950 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || || || |||| | |||||| ||| || || |||||||| || || || Sbjct 23949 GCGGGAACAGTGACCACGGCGTGCTTGACTTCCTTTCCAAGGTACGATTCGGCAATCTCC 23890 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTT 7824 ||||| || |||||||| | || |||||||||| | ||||| || Sbjct 23889 TTCATCTTTCCGAGAACCATAGCAGAGATCTCTTCAGGTGTGAACTGCTT 23840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634899587175000