Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq17 118 2e-21 seq7726 111 3e-19 seq28266 100 6e-16 >seq17 Length=262609 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||||||||||||||| || || || ||||| ||||| || || ||||| ||||| || Sbjct 67099 CTAACCTGCGAAGATAAGCCGCTGCTGATCTGGCGGAATACCCTCCTTGTCCTGAATCTT 67040 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || ||||||||||| |||||||| ||| |||||||| || | |||||||| || Sbjct 67039 TGCTTTCACGTTCTCAATAGTGTCCGATGCTTCGACTTCAAGCGTGATGGTCTTTCCCGT 66980 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||| || || || | ||||||| Sbjct 66979 TAGAGTCTTGACAAAAATTTGCATT 66955 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| || ||||| ||||| ||||||||||||||||| ||||| || || || || || Sbjct 66746 CTAACCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGGATCTT 66687 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || ||||| || || ||| ||| ||||| || |||| |||||||| || Sbjct 66686 CGCCTTCACATTTTCAATAGTATCAGAAGCTTCTACTTCCAGCGTAATAGTCTTTCCGGT 66627 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | |||||| ||||| | |||||| Sbjct 66626 AAGAGTTTTGACGAAAATTTGCAT 66603 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| || || || || || |||||||| || ||||| ||||| || |||||||||||| Sbjct 68426 ACCAGCAAAAATGAGCCGCTGTTGGTCAGGTGGAATTCCTTCCTTATCTTGAATTTTTGC 68367 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 || || ||||||||||||||||| ||||| || | || | || || || ||||| Sbjct 68366 TTTAACATTCTCAATGGTGTCCGACGCCTCCACCTCCAACGTTATTGTTTTCCCAGTCAA 68307 Query 195120 AGTTTTTACGAACACTTGCATT 195141 || || || || | |||||| Sbjct 68306 TGTCTTGACAAAAATCTGCATT 68285 >seq7726 Length=8395 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||||||||||||| ||||| || |||||||| || || ||||| ||||| || || || Sbjct 2748 CTTACCTGCGAAGATCAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTT 2689 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || ||||||||||||||||| ||| || || ||||| || | ||||| || || Sbjct 2688 AGCTTTAACGTTCTCAATGGTGTCTGAAGCCTCAACCTCAAGTGTGATAGTCTTCCCGGT 2629 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | |||||| Sbjct 2628 GAGAGTCTTGACGAAGATTTGCAT 2605 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || |||||||||||| |||| ||| || || || || || || || |||||||||||||| Sbjct 2451 CTGACCTGCGAAGATCAGTCTTTGCTGATCGGGTGGGATTCCCTCCTTGTCTTGAATTTT 2392 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||||||||| || ||| |||||| || ||||||| || || ||||| Sbjct 2391 AGCTTTCACATTCTCAATGGTATCAGAAGCTTCCACCTCGAGGGTAATAGTTTTGCCTGT 2332 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || |||||||| | |||||| Sbjct 2331 TAGCGTCTTTACGAAAATCTGCATT 2307 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| |||||||| | || ||| || || || || || ||||| ||||| ||||| || Sbjct 3936 CTAACCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTT 3877 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| |||||||| ||||||||| ||| ||||||||||| | || || || || Sbjct 3876 GGCTTTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGT 3817 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||||| ||||| | |||||| Sbjct 3816 GAGGGTTTTCACGAAGATCTGCATT 3792 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| |||||||| | ||| || || ||||| ||||| ||||| ||||| || || || Sbjct 3047 CTAACCGGCGAAGATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTT 2988 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| || || || ||||||||||| ||| ||||| || || | || ||||| || Sbjct 2987 TGCCTTAACATTTTCGATGGTGTCCGACGCTTCAACTTCGAGAGTGATGGTTTTTCCGGT 2928 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 2927 GAGGGTCTTGACAAAGATCTGCAT 2904 >seq28266 Length=552 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| |||||||| | || ||| || || || || || ||||| ||||| ||||| || Sbjct 328 CTAACCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTT 269 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| |||||||| ||||||||| ||| ||||||||||| | || || || || Sbjct 268 GGCTTTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGT 209 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||||| ||||| | |||||| Sbjct 208 GAGGGTTTTCACGAAGATCTGCATT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109064027530625