Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq19468 122 7e-22 seq7726 89.7 4e-12 seq17 86.0 5e-11 >seq19468 Length=1528 Score = 122 bits (134), Expect = 7e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || | ||||| ||||| || || || ||||| ||||||||||| || || || Sbjct 1295 GGATGCCGTCGTCACTGTGCCAGCTTACTTCAACGACTCCCAACGTCAAGCCACCAAGGA 1236 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 |||||| ||||| || || || ||||| ||||| |||||||| |||||||| ||||| Sbjct 1235 CGCTGGAGCAATTGCCGGTCTCAACGTTCTCCGTATCATCAATGAGCCTACTGCCGCTGC 1176 Query 550516 ACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTG 550575 | || || ||||| || ||| | | ||| | ||||| |||||||| ||| Sbjct 1175 TATCGCCTACGGACTCGACAAAAAGGGTACCGGAGAGCGAAATGTGCTCATCTTCGATCT 1116 Query 550576 TGGAGGT 550582 ||||||| Sbjct 1115 TGGAGGT 1109 >seq7726 Length=8395 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || || || || |||||||||||||| || || ||||| || || ||||||||||| | Sbjct 2447 CCTGCGAAGATCAGTCTTTGCTGATCGGGTGGGATTCCCTCCTTGTCTTGAATTTTAGCT 2388 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || |||||| ||||||| | | || ||||| |||| |||||| || || || Sbjct 2387 TTCACATTCTCAATGGTATCAG-AAGCTTCCACCTCGAGGGTAATAGTTTTGCCTGTTAG 2329 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || || |||||||| ||||| Sbjct 2328 CGTCTTTACGAAAATCTGCAT 2308 >seq17 Length=262609 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 |||||||| || ||||| |||||||| || ||||||||||| || ||||| || || Sbjct 66459 CCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGAC 66400 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGA 563454 ||||| || ||||| || | | | |||||| || | ||||| || || ||| Sbjct 66399 TTTACGTTTTCGATTGTGTCGGAGGCTTCAACTTCGAGTGTGATCGTTTTCCCGGTGAGA 66340 Query 563455 GTTTTAACGAAAATTTGCAT 563474 ||||| |||||||| ||||| Sbjct 66339 GTTTTCACGAAAATCTGCAT 66320 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || |||| || || || |||||||||||||| ||||| || || || Sbjct 66742 CCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGGATCTTCGCC 66683 Query 563395 TTTACTGCCTCAATTGTATCAGT-GTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||| ||||||| | ||| ||| || |||| ||| || || ||||| Sbjct 66682 TTCACATTTTCAATAGTATCAGAAGCTTCTAC-TTCCAGCGTAATAGTCTTTCCGGTAAG 66624 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 |||||| |||||||||||||| Sbjct 66623 AGTTTTGACGAAAATTTGCAT 66603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027742517518750