Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq20723 105 5e-18 seq7726 105 5e-18 seq12672 100 2e-16 seq2624 100 2e-16 seq17 96.9 3e-15 >seq20723 Length=1367 Score = 105 bits (116), Expect = 5e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| |||||| ||||| ||||| || || ||||| || || || ||||| || || || Sbjct 472 CAATTACTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 413 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| || ||| ||| |||| | ||||| || | ||| ||||| || |||| || || Sbjct 412 AATCTTCGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTT 353 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 ||||| | || || || |||||||||||| | | |||||| Sbjct 352 TCCGGTGAGCGTCTTCACGAATATCTGCATGCCTCCACGAAGA 310 >seq7726 Length=8395 Score = 105 bits (116), Expect = 5e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| |||||| ||||| ||||| || || ||||| || || || ||||| || || || Sbjct 4835 CAATTACTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 4776 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| || ||| ||| |||| | ||||| || | ||| ||||| || |||| || || Sbjct 4775 AATCTTCGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTT 4716 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 ||||| | || || || |||||||||||| | | |||||| Sbjct 4715 TCCGGTGAGCGTCTTCACGAATATCTGCATGCCTCCACGAAGA 4673 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || |||||| || |||| | || |||||||| || || || || || ||||||||||| Sbjct 2451 CTGACCTGCGAAGATCAGTCTTTGCTGATCGGGTGGGATTCCCTCCTTGTCTTGAATTTT 2392 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | || ||||| | |||||| || || || | |||||||| || Sbjct 2391 AGCTTTCACATTCTCAATGGTATCAGAAGCTTCCACCTCGAGGGTAATAGTTTTGCCTGT 2332 Query 101446 TAAAGTTTTTACAAATATCTGCATGGT 101472 || || ||||| || |||||||| || Sbjct 2331 TAGCGTCTTTACGAAAATCTGCATTGT 2305 >seq12672 Length=3626 Score = 100 bits (110), Expect = 2e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||| | || | ||||| |||||||||||||| ||||| || ||||||| ||| Sbjct 2856 TACCGGCATAAATAATTCGCTGCTGATCGGGCGGAATCCCTTCCTTGTCTTGAACTTTCA 2915 Query 101388 GTTTTACAATTTCTACAGTGTCAGAC-GTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| |||||||| ||| | || ||||| || |||| || || ||||| Sbjct 2916 ATTTCACATTTTCCACAGTGTC-GACGGGCTCGACTTCGAGTGTGATAGTCTTTCCGGTG 2974 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | |||||| || || | ||||||| Sbjct 2975 AGAGTTTTGACGAAAACCTGCATG 2998 >seq2624 Length=26635 Score = 100 bits (110), Expect = 2e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||| | || | ||||| |||||||||||||| ||||| || ||||||| ||| Sbjct 21713 TACCGGCATAAATAATTCGCTGCTGATCGGGCGGAATCCCTTCCTTGTCTTGAACTTTCA 21772 Query 101388 GTTTTACAATTTCTACAGTGTCAGAC-GTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| |||||||| ||| | || | ||| || |||| || || ||||| Sbjct 21773 ATTTCACATTTTCCACAGTGTC-GACGGGCTCGAGTTCGAGTGTGATTGTCTTTCCGGTG 21831 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | |||||| ||||| | ||||||| Sbjct 21832 AGAGTTTTGACAAAAACCTGCATG 21855 >seq17 Length=262609 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||| ||||| || | |||||||| || || ||||| ||||| ||||||||||||||| Sbjct 68426 ACCAGCAAAAATGAGCCGCTGTTGGTCAGGTGGAATTCCTTCCTTATCTTGAATTTTTGC 68367 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 ||| ||| | || | ||||| |||| ||||| || | || | ||||| || || || Sbjct 68366 TTTAACATTCTCAATGGTGTCCGACGCCTCCACCTCCAACGTTATTGTTTTCCCAGTCAA 68307 Query 101449 AGTTTTTACAAATATCTGCAT 101469 || || ||||| |||||||| Sbjct 68306 TGTCTTGACAAAAATCTGCAT 68286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396136529236875