Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq636 109 1e-18 >seq636 Length=76548 Score = 109 bits (120), Expect = 1e-18 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 212894 CTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAA 212953 ||| | ||| || || ||||| || ||||||||||| || ||||| || | ||| | Sbjct 18634 CTTCAGCAGATGCGGATTGACAATTTGGAAGTCACCAGAAAGCACTCTTCGACTGTAGAT 18693 Query 212954 GTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGT 213013 ||| |||||||| ||||| ||| ||||||||| || ||||| || || ||| || || Sbjct 18694 GTTCGAAGTGTAAGGCTCAATGGACTCGTTGTTGCCGAGAATTTGAGCGGTGGACGCCGT 18753 Query 213014 GGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGC 213053 ||||| || ||||| || | |||||| | |||||| ||| Sbjct 18754 TGGCATTGGGGCCACTAGCAAACTGTTACGCACTCCATGC 18793 Score = 91.5 bits (100), Expect = 3e-13 Identities = 201/299 (67%), Gaps = 7/299 (2%) Strand=Plus/Plus Query 213909 TCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG--- 213965 || || ||||| || ||||||||||||| ||||| ||||| || ||||| |||||| Sbjct 21171 TCGAAAATGTCAGCATGCCACGGCTCCAAATAGATCGCAAACGCTCCCGGTCTCTTGTTA 21230 Query 213966 CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCG 214025 |||||||| ||||| | || | ||| ||| ||| || | || | ||| ||| Sbjct 21231 CCGCCCTGATCCACATAACGAGCAGTGTTATTGTAGACGCGAAGCATAGGAATCAGACCG 21290 Query 214026 TTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGT--TGCTCATGG 214083 ||||| ||||| ||||| || || |||| || | ||| | | | || ||| Sbjct 21291 TTGGAGGTGCCGTTCGTTCCGGCAATTAACGATCCCGTGGCACGAATCTTATGAACAT-- 21348 Query 214084 AGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGA 214143 || || ||||| ||||| ||| ||||||| ||| || || ||| || || || Sbjct 21349 TTAGGCCGATGCCTCCGGCACTCTTCGAGATCAGGGCACACTGCTTCAACGTGTCATAGA 21408 Query 214144 TGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG 214202 | || || || || || | | | |||||| |||||| ||| || || |||||| Sbjct 21409 TTCCAGCGATCGAATCCTCACTCATGGTCAGCAGGAAGCATGACGATAGTTGAGGCCTG 21467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931190752800000