Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq636 96.9 6e-15 >seq636 Length=76548 Score = 96.9 bits (106), Expect = 6e-15 Identities = 200/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 |||| ||||||||||| ||||||||||||| ||||| || | || || |||| ||||| Sbjct 21169 ACTCGAAAATGTCAGCATGCCACGGCTCCAAATAGATCGCAAACGCTCCCGGTCTCTTGT 21228 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 | || |||||||||| ||| ||| | ||| ||| |||||| | || | ||| Sbjct 21229 TACCGCCCTGATCCA-CATAACGAGCAGTGTTATTGTAGACGCGAAGCATAGGAATCAGA 21287 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304 |||||||| ||||| || || ||| ||| || ||| | | ||| || Sbjct 21288 CCGTTGGAGGTGCCGTTCGTTCCGGCAATTAACGATCCCGTGGCACGAATCTTATGAACA 21347 Query 222305 GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 | |||||| || ||||| |||||||||| ||| || ||| | ||||| | Sbjct 21348 TTTAGGCCGATGCCTCCGGCACTCTTCGAGATCAGGGCACACTGCTTCAACGTGTCATAG 21407 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419 || || | || || ||||| | | | ||||||| || || ||||| | |||| Sbjct 21408 ATTCCAGCGATCGAATCCTCACTCATGGTCAGCAGGAAGCATGACGATAGTTGAG 21462 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 221117 TTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGT 221176 || || | |||||| || || || ||||| || | ||| | ||| |||||| | || Sbjct 18650 TTGACAATTTGGAAGTCACCAGAAAGCACTCTTCGACTGTAGATGTTCGAAGTGTAAGGC 18709 Query 221177 TCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACC 221236 || ||| |||||||||||| || || ||||| ||| || || ||||| || ||||| Sbjct 18710 TCAATGGACTCGTTGTTGCCGAGAATTTGAGCGGTGGACGCCGTTGGCATTGGGGCCACT 18769 Query 221237 AGCAGACTGTTGCGCAGTCC 221256 |||| |||||| |||| ||| Sbjct 18770 AGCAAACTGTTACGCACTCC 18789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928503739800000