Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq87 129 4e-24 seq17 104 2e-16 seq20723 93.3 3e-13 seq7726 93.3 3e-13 seq19468 87.8 1e-11 >seq87 Length=164798 Score = 129 bits (142), Expect = 4e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 474641 GAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAA 474700 || || ||| | || | |||||| | |||||| ||||||| || | || ||||| || Sbjct 36467 GACACAAAAGAGTTCGCTCCGGAAGAGATTTCTGCAATGGTGTTGACGAAGATGAAGGAA 36526 Query 474701 ACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATAT 474760 | || ||||||||||| | || || | | ||||| | |||||||| || || Sbjct 36527 ATTGCCGAATCATATCTTGGCAAGGAGGTGAAACACGCAGTCGTCACTGTTCCGGCCTAC 36586 Query 474761 TTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTT 474820 ||||||||| ||||||| ||||| || || ||||| |||| ||||| || || ||||| Sbjct 36587 TTTAATGATGCTCAACGACAAGCCACGAAGGATGCTGGAACTATTGCTGGCCTAAATGTG 36646 Query 474821 TTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || || || || || || || || || ||| |||| |||||| | || ||||| Sbjct 36647 GTTCGAATCATCAACGAGCCCACCGCGGCTGCAATTGCCTATGGTTTGGACAAGAA 36702 >seq17 Length=262609 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||| || || || ||||| || ||||||||||||||||| || || ||||| Sbjct 66742 CCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGGATCTTCGCC 66683 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||||||||||| | ||| || |||||||| || ||||| ||| Sbjct 66682 TTCACATTTTCAATAGTATCAGAAGCTTCTACTTCCAGCGTAATAGTCTTTCCGGTAAGA 66623 Query 480753 GTCTTAACGAAAATTTG 480769 || || ||||||||||| Sbjct 66622 GTTTTGACGAAAATTTG 66606 >seq20723 Length=1367 Score = 93.3 bits (102), Expect = 3e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| |||||||| || | ||||| ||||| || || |||||||||||||| ||||| Sbjct 469 TTACTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAAT 410 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 ||| ||||||| ||| || || || | | | ||| ||||| || || || || Sbjct 409 CTTCGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCC 350 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 |||||| ||||| ||||| || || Sbjct 349 GGTGAGCGTCTTCACGAATATCTG 326 >seq7726 Length=8395 Score = 93.3 bits (102), Expect = 3e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 480626 TTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAAT 480685 || ||| |||||||| || | ||||| ||||| || || |||||||||||||| ||||| Sbjct 4832 TTACTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAAT 4773 Query 480686 CTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 ||| ||||||| ||| || || || | | | ||| ||||| || || || || Sbjct 4772 CTTCGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCC 4713 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 |||||| ||||| ||||| || || Sbjct 4712 GGTGAGCGTCTTCACGAATATCTG 4689 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||| ||||| | ||||||||||| || ||||||||||||||||| || ||||| Sbjct 3636 CCAGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCC 3577 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 |||||| ||| || || || | | | ||| || || || || || |||||||| Sbjct 3576 TTGACATTTTCGATTGTGTCGGAGGCCTCAACTTCGAGCGTGATGGTCTTTCCGGTGAGG 3517 Query 480753 GTCTTAACGAAAATTTG 480769 ||||| || ||||| || Sbjct 3516 GTCTTGACAAAAATCTG 3500 >seq19468 Length=1528 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| || | ||||| ||||| || || || || || ||||||||||| || || || Sbjct 1294 GATGCCGTCGTCACTGTGCCAGCTTACTTCAACGACTCCCAACGTCAAGCCACCAAGGAC 1235 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || ||| |||||| ||||| || ||| | ||||| || ||||| || || || || || Sbjct 1234 GCTGGAGCAATTGCCGGTCTCAACGTTCTCCGTATCATCAATGAGCCTACTGCCGCTGCT 1175 Query 474854 CTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGT 474913 | || || || || || || || | | ||| |||||| | ||||| ||| | Sbjct 1174 ATCGCCTACGGACTCGACAAAAAGGGTACCGGAGAGCGAAATGTGCTCATCTTCGATCTT 1115 Query 474914 GGAGGT 474919 |||||| Sbjct 1114 GGAGGT 1109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266919163722500