Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq28266 95.1 2e-14 seq7726 95.1 2e-14 seq17 89.7 1e-12 seq20723 86.0 1e-11 >seq28266 Length=552 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 |||||| ||||| ||||| || ||||||||||| |||||||| || || || || || Sbjct 325 ACCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGC 266 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||| ||||| || | || || | ||| ||||| || || |||||||| ||||| | Sbjct 265 TTTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAG 206 Query 192516 TGTTTTAATAAATATCTGCATT 192537 ||||| | || ||||||||| Sbjct 205 GGTTTTCACGAAGATCTGCATT 184 >seq7726 Length=8395 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 |||||| ||||| ||||| || ||||||||||| |||||||| || || || || || Sbjct 3933 ACCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGC 3874 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||| ||||| || | || || | ||| ||||| || || |||||||| ||||| | Sbjct 3873 TTTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAG 3814 Query 192516 TGTTTTAATAAATATCTGCATT 192537 ||||| | || ||||||||| Sbjct 3813 GGTTTTCACGAAGATCTGCATT 3792 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| |||||||||||||| |||| || ||||| ||||| |||||||| || || || Sbjct 4835 CAATTACTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 4776 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 || || ||| ||||| || | || || | ||| ||||| || || ||||| || Sbjct 4775 AATCTTCGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTT 4716 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || || | ||||||||||| Sbjct 4715 TCCGGTGAGCGTCTTCACGAATATCTGCAT 4686 >seq17 Length=262609 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| ||||| || | || ||| || |||||||||||||| || || ||||| || || Sbjct 68142 ACCTGCAAAAATGAGTCGCTGCTGGTCAGGTGGTATTCCCTCCTTGTCTTGGATCTTCGC 68083 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||||||||| || | || |||| ||| || || || || ||||| || ||||| | Sbjct 68082 TTTTACATTTTCAATCGTGTCAGACGCTTCAACCTCAAGCGTGATGGTCTTTCCAGTGAG 68023 Query 192516 TGTTTTAATAAATATCTGCATT 192537 |||||| | ||| || |||||| Sbjct 68022 TGTTTTCACAAAAATTTGCATT 68001 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 |||||||||||| | || |||||| || || || |||||||| ||||| || || || Sbjct 66743 ACCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGGATCTTCGC 66684 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 || ||||| |||| ||| || | ||||||||| || ||||| || || || || | Sbjct 66683 CTTCACATTTTCAATAGTATCAGAAGCTTCTACTTCCAGCGTAATAGTCTTTCCGGTAAG 66624 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||||| | || || ||||| Sbjct 66623 AGTTTTGACGAAAATTTGCAT 66603 >seq20723 Length=1367 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||| |||||||||||||| |||| || ||||| ||||| |||||||| || || || Sbjct 472 CAATTACTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 413 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 || || ||| ||||| || | || || | ||| ||||| || || ||||| || Sbjct 412 AATCTTCGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTT 353 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || || | ||||||||||| Sbjct 352 TCCGGTGAGCGTCTTCACGAATATCTGCAT 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984109474031250