Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq17 104 4e-17 seq20723 86.0 1e-11 seq7726 86.0 1e-11 >seq17 Length=262609 Score = 104 bits (114), Expect = 4e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 |||||||||||| | | ||||||||||||||| |||||||| |||||||| ||||| Sbjct 68426 ACCAGCAAAAATGAGCCGCTGTTGGTCAGGTGGAATTCCTTCCTTATCTTGAATTTTTGC 68367 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||| ||||| || || || |||| || || || | || || ||||| ||||| || Sbjct 68366 TTTAACATTCTCAATGGTGTCCGACGCCTCCACCTCCAACGTTATTGTTTTCCCAGTCAA 68307 Query 172049 TGTTTTAATGAATATCTGCATT 172070 ||| || | || ||||||||| Sbjct 68306 TGTCTTGACAAAAATCTGCATT 68285 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| |||||||| | || ||| ||||||||||||||||| || || ||||| || || Sbjct 68142 ACCTGCAAAAATGAGTCGCTGCTGGTCAGGTGGTATTCCCTCCTTGTCTTGGATCTTCGC 68083 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||||||||| || || || |||| ||| || || || || ||||| || ||||| | Sbjct 68082 TTTTACATTTTCAATCGTGTCAGACGCTTCAACCTCAAGCGTGATGGTCTTTCCAGTGAG 68023 Query 172049 TGTTTTAATGAATATCTGCATT 172070 |||||| | || || |||||| Sbjct 68022 TGTTTTCACAAAAATTTGCATT 68001 >seq20723 Length=1367 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| ||||||||||| || |||| || || || ||||| |||||||| || || || Sbjct 472 CAATTACTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 413 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 || || ||| ||||| || || || || | ||| ||||| || || ||||| || Sbjct 412 AATCTTCGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTT 353 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || | |||||||||||| Sbjct 352 TCCGGTGAGCGTCTTCACGAATATCTGCAT 323 >seq7726 Length=8395 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 ||||| ||||||||||| || |||| || || || ||||| |||||||| || || || Sbjct 4835 CAATTACTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 4776 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 || || ||| ||||| || || || || | ||| ||||| || || ||||| || Sbjct 4775 AATCTTCGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTT 4716 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || | |||||||||||| Sbjct 4715 TCCGGTGAGCGTCTTCACGAATATCTGCAT 4686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904803645375000