Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq636 104 7e-17 seq840 102 2e-16 >seq636 Length=76548 Score = 104 bits (114), Expect = 7e-17 Identities = 139/190 (73%), Gaps = 5/190 (3%) Strand=Plus/Plus Query 156011 AATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA-CTACCATTCCTCTTG---CCAC 156066 ||| |||| ||| ||||||| ||| || ||||| || || || ||||| || | Sbjct 21176 AATGTCAGCATGCCACGGCTCCAAATAGATCGCAAACGCTCCCGGTC-TCTTGTTACCGC 21234 Query 156067 CCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGG 156126 ||||||| ||||| |||||||| |||||| |||| | ||||||||||| | ||| |||| Sbjct 21235 CCTGATCCACATAACGAGCAGTGTTATTGTAGACGCGAAGCATAGGAATCAGACCGTTGG 21294 Query 156127 AAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTC 156186 | ||||| || |||||| ||| ||| || | | |||| ||||||| || ||| | Sbjct 21295 AGGTGCCGTTCGTTCCGGCAATTAACGATCCCGTGGCACGAATCTTATGAACATTTAGGC 21354 Query 156187 CAATACCACC 156196 | || || || Sbjct 21355 CGATGCCTCC 21364 >seq840 Length=65322 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| || ||||| | |||||| ||||| |||||| || || ||||| ||||| Sbjct 6214 TTCCATAGCTTTTATTAATCTACGCTGGATATATCCAGTTTCAGCAGTCTTTACGGCTGT 6273 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693 |||||| ||||| ||||||| |||||||| |||||||| | ||| |||| || || Sbjct 6274 ATCAATGAGACCTTCACGACCTCCCATAGCGTGGAAGAAGAACTCAGCCGGAGTGAGACC 6333 Query 302694 CCCAATAAAGGAGCTCTCAACGAAAC 302719 | | | | ||| |||| ||||||| Sbjct 6334 GGCCAGATACGAGTTCTCGACGAAAC 6359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471263656149375