Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2624 134 2e-25 seq211 118 1e-20 seq3746 114 2e-19 >seq2624 Length=26635 Score = 134 bits (148), Expect = 2e-25 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | |||||| || |||||||||||||| ||||| | || Sbjct 25847 GCTTGGCGAGCTCTCCGGGAAGGATCAGTCGGACGGCGGTCTGGATTTCGCGAGACGAGA 25906 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| |||| |||||||||| || || | | |||| | |||| | Sbjct 25907 TCGTCGATCGCTTGTTGTAGTGAGCCAGACGGCTCGCTTCAGCGGCGATTCTCTCGAATA 25966 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| |||||| | ||| ||||| || |||||||| Sbjct 25967 CGTCGTTCACGAACGAGTTCATGATCGACATAGCCTTTGAGGAGACTCCGGTGTCGGGGT 26026 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGAC-GAGTA 1254559 | |||||||| || || ||||||| | ||| ||||| Sbjct 26027 GAACCTGCTTCAGGACACGGTAGATGTA-GACGGAGTA 26063 >seq211 Length=126763 Score = 118 bits (130), Expect = 1e-20 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCG-TGGGACAAGGAGTTTTGCGACGTCGAGCAGCCC 1592164 ||||||||||||| ||||| || | | ||||| ||||| | || || ||| | Sbjct 90629 AGAAGCGCACCGATGACAT-TCCCAGCTGGGATGTTGAGTTCCTGAAAGTTGATCAGGGC 90687 Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 ||| | || || |||||||||||||||||||| |||||||||||| || || ||| | Sbjct 90688 ACCTTGTTCGAATTGATCCTCGCCGCCAACTATCTCGACATCAAGGGGCTTCTTGATGTC 90747 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 |||||| |||||||||| |||||||| || || |||| ||||| || || || Sbjct 90748 ACCTGCAAGACTGTGGCCAATATGATCAAAGGAAAAACGCCAGAGGAAATTCGTCGCACT 90807 Query 1592285 TTTAACATCAAG 1592296 || ||||||||| Sbjct 90808 TTCAACATCAAG 90819 >seq3746 Length=19294 Score = 114 bits (126), Expect = 2e-19 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| ||| |||||| || |||||||||||||| || || | | || Sbjct 5050 GCTTGGCGAGTTCTCCGGGCAGGATCAGACGGACGGCGGTCTGGATTTCACGGGAGGAGA 5109 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||| ||||| | || ||||||||| || || | | || || |||| | Sbjct 5110 TCGTCGAGCGTTTGTTGTACTGGGCCAGACGGGAAGCTTCAGCAGCAATACGTTCGAATA 5169 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || || ||||||| ||||||| ||| |||| ||| ||| |||| Sbjct 5170 CGTCGTTGACGAAGGAATTCATGATGGACATCGCTTTGGATGAGACGCCGGTGTCCGGGT 5229 Query 1254523 GCACCTGCTTGAGCAC 1254538 | || ||||| ||||| Sbjct 5230 GGACTTGCTTCAGCAC 5245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104728549936875