Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014
-09-26] 29,375 sequences; 294,400,206 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq17 118 1e-21
seq20723 114 1e-20
seq7726 114 1e-20
seq28266 91.5 1e-13
>seq17
Length=262609
Score = 118 bits (130), Expect = 1e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | ||||| || ||||| ||||| || || |||||||| |||||| ||
Sbjct 66320 ATGCAGATTTTCGTGAAAACTCTCACCGGGAAAACGATCACACTCGAAGTTGAAGCCTCC 66379
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | |||| ||||| |||||||||||||| |||||||| || || |||||
Sbjct 66380 GACACAATCGAAAACGTAAAGTCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 66439
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| | | |||||||||||
Sbjct 66440 CAGAGACTCATCTTTGCCGG 66459
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| | ||||| || || || || ||||| ||||| || || |||||| |
Sbjct 66022 ATGCAAATTTTTGTGAAAACCCTTACTGGAAAGACTATCACGCTTGAGGTTGAAGCCTCT 66081
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| ||||| |||||||||||||| ||||| || || || |||||
Sbjct 66082 GACACGATTGAAAATGTAAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCGGATCAG 66141
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| || | |||||||| ||
Sbjct 66142 CAGCGACTCATCTTTGCAGG 66161
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | ||||| || ||||| || ||||||||||| ||||||||||| |
Sbjct 66603 ATGCAAATTTTCGTCAAAACTCTTACCGGAAAGACTATTACGCTGGAAGTAGAAGCTTCT 66662
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || || |||||||| || || |||||||| ||||| || |||
Sbjct 66663 GATACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAAGGAATTCCTCCAGACCAA 66722
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| || | |||||||| ||
Sbjct 66723 CAGCGACTCATCTTTGCTGG 66742
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || ||||| || || || ||||| || || || || |
Sbjct 68608 ATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACGATCACGCTTGAGGTGGAGGCTTCG 68667
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| || |||| || || |||||||||||||| ||||| || || || |||||
Sbjct 68668 GACACCGTCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGATCAG 68727
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| ||| | |||||||| ||
Sbjct 68728 CAGCGTCTCATCTTTGCTGG 68747
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| | ||||| || || || || || || ||||| || || ||||| |
Sbjct 68002 ATGCAAATTTTTGTGAAAACACTCACTGGAAAGACCATCACGCTTGAGGTTGAAGCGTCT 68061
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| |||||| |||||||||||||| || |||||||| || || ||
Sbjct 68062 GACACGATTGAAAATGTAAAAGCGAAGATCCAAGACAAGGAGGGAATACCACCTGACCAG 68121
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| || | || ||||| ||
Sbjct 68122 CAGCGACTCATTTTTGCAGG 68141
>seq20723
Length=1367
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || ||||| ||||| || || || || |||||||| ||||| ||
Sbjct 323 ATGCAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTCC 382
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | |||| || ||| ||||| || ||||| |||||||| || || |||||
Sbjct 383 GACACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 442
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
||||| ||||||||||| || ||
Sbjct 443 CAACGATTGATCTTTGCTGGTAA 465
>seq7726
Length=8395
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || ||||| ||||| || || || || |||||||| ||||| ||
Sbjct 4686 ATGCAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTCC 4745
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | |||| || ||| ||||| || ||||| |||||||| || || |||||
Sbjct 4746 GACACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 4805
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
||||| ||||||||||| || ||
Sbjct 4806 CAACGATTGATCTTTGCTGGTAA 4828
Score = 113 bits (124), Expect = 4e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || ||||| ||||| || || |||||||| ||||| |
Sbjct 2904 ATGCAGATCTTTGTCAAGACCCTCACCGGAAAAACCATCACTCTCGAAGTTGAAGCGTCG 2963
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || ||||||||| ||||| |||||||| || || |||||
Sbjct 2964 GACACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAG 3023
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| || |||||||| |||||
Sbjct 3024 CAGCGATTGATCTTCGCCGG 3043
Score = 113 bits (124), Expect = 4e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | || || || ||||| || || || ||||||||||| || ||| ||
Sbjct 3497 ATGCAGATTTTTGTCAAGACCCTCACCGGAAAGACCATCACGCTCGAAGTTGAGGCCTCC 3556
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | |||| || || |||||||| ||||| |||||||| || || ||||||
Sbjct 3557 GACACAATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAA 3616
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||| ||||| || || ||
Sbjct 3617 CAACGATTGATTTTCGCTGG 3636
Score = 109 bits (120), Expect = 5e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | ||||| || || || ||||| || || || || || ||||| |
Sbjct 4092 ATGCAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAGGTCGAAGCTTCG 4151
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || ||| |||||||||||||| |||||||| || || |||||
Sbjct 4152 GACACGATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 4211
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||| ||||||||||||||
Sbjct 4212 CAACGGTTGATCTTTGCCGG 4231
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || ||||| ||||| || ||| ||
Sbjct 3201 ATGCAGATCTTCGTGAAGACCCTCACAGGAAAGACCATCACGCTTGAAGTTGAGGCCTCC 3260
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || ||| |||||||| ||||| ||||| || || || |||||
Sbjct 3261 GACACGATCGAAAATGTGAAAGCTAAGATCCAGGACAAGGAAGGTATTCCACCAGATCAG 3320
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| || |||||||| |||||
Sbjct 3321 CAGCGGTTGATCTTCGCCGG 3340
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | ||||| || || || || || || || ||||| || || ||| ||
Sbjct 4388 ATGCAGATTTTCGTCAAAACCCTCACAGGAAAGACGATCACCCTCGAGGTTGAGGCCTCC 4447
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || || ||||||||| ||||| |||||||| || || |||||
Sbjct 4448 GATACGATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAG 4507
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| || ||||||||||| ||
Sbjct 4508 CAGCGATTGATCTTTGCTGG 4527
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| |||||||| || | || |||||||| || ||||||||||| ||||| || |||||
Sbjct 2305 ACAATGCAGATTTTCGTAAAGACGCTAACAGGCAAAACTATTACCCTCGAGGTGGAAGCT 2364
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| || || | || | || ||| || || |||||||| || ||||| || ||||||
Sbjct 2365 TCTGATACCATTGAGAATGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGAT 2424
Query 24821 CAACAACGTTTGATCTTTGCCGG 24843
|| ||| | ||||||| || ||
Sbjct 2425 CAGCAAAGACTGATCTTCGCAGG 2447
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | ||||| || || || ||||| || || || ||||| ||||| |
Sbjct 3793 ATGCAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAAGTCGAAGCTTCG 3852
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || ||| ||||| || ||||| |||||||| || || |||||
Sbjct 3853 GACACGATTGAGAATGTCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCTGATCAG 3912
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||| | |||||||| || ||
Sbjct 3913 CAAAGATTGATCTTCGCTGG 3932
>seq28266
Length=552
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | ||||| || || || ||||| || || || ||||| ||||| |
Sbjct 185 ATGCAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAAGTCGAAGCTTCG 244
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || ||| ||||| || ||||| |||||||| || || |||||
Sbjct 245 GACACGATTGAGAATGTCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCTGATCAG 304
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||| | |||||||| || ||
Sbjct 305 CAAAGATTGATCTTCGCTGG 324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449732403225000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |