Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq17 118 1e-21 seq20723 114 1e-20 seq7726 114 1e-20 seq28266 91.5 1e-13 >seq17 Length=262609 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || ||||| ||||| || || |||||||| |||||| || Sbjct 66320 ATGCAGATTTTCGTGAAAACTCTCACCGGGAAAACGATCACACTCGAAGTTGAAGCCTCC 66379 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| ||||| |||||||||||||| |||||||| || || ||||| Sbjct 66380 GACACAATCGAAAACGTAAAGTCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 66439 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || | | ||||||||||| Sbjct 66440 CAGAGACTCATCTTTGCCGG 66459 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || || || ||||| ||||| || || |||||| | Sbjct 66022 ATGCAAATTTTTGTGAAAACCCTTACTGGAAAGACTATCACGCTTGAGGTTGAAGCCTCT 66081 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| |||||||||||||| ||||| || || || ||||| Sbjct 66082 GACACGATTGAAAATGTAAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCGGATCAG 66141 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | |||||||| || Sbjct 66142 CAGCGACTCATCTTTGCAGG 66161 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || ||||| || ||||||||||| ||||||||||| | Sbjct 66603 ATGCAAATTTTCGTCAAAACTCTTACCGGAAAGACTATTACGCTGGAAGTAGAAGCTTCT 66662 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||| || || |||||||| ||||| || ||| Sbjct 66663 GATACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAAGGAATTCCTCCAGACCAA 66722 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | |||||||| || Sbjct 66723 CAGCGACTCATCTTTGCTGG 66742 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || ||||| || || || || | Sbjct 68608 ATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACGATCACGCTTGAGGTGGAGGCTTCG 68667 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| || |||| || || |||||||||||||| ||||| || || || ||||| Sbjct 68668 GACACCGTCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGATCAG 68727 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| | |||||||| || Sbjct 68728 CAGCGTCTCATCTTTGCTGG 68747 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || || || || || ||||| || || ||||| | Sbjct 68002 ATGCAAATTTTTGTGAAAACACTCACTGGAAAGACCATCACGCTTGAGGTTGAAGCGTCT 68061 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| |||||| |||||||||||||| || |||||||| || || || Sbjct 68062 GACACGATTGAAAATGTAAAAGCGAAGATCCAAGACAAGGAGGGAATACCACCTGACCAG 68121 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | || ||||| || Sbjct 68122 CAGCGACTCATTTTTGCAGG 68141 >seq20723 Length=1367 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| ||||| || || || || |||||||| ||||| || Sbjct 323 ATGCAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTCC 382 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| ||||| || ||||| |||||||| || || ||||| Sbjct 383 GACACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 442 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||| ||||||||||| || || Sbjct 443 CAACGATTGATCTTTGCTGGTAA 465 >seq7726 Length=8395 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| ||||| || || || || |||||||| ||||| || Sbjct 4686 ATGCAGATATTCGTGAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTTGAAGCTTCC 4745 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| ||||| || ||||| |||||||| || || ||||| Sbjct 4746 GACACAATCGAAAATGTCAAAGCGAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 4805 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||| ||||||||||| || || Sbjct 4806 CAACGATTGATCTTTGCTGGTAA 4828 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| ||||| || || |||||||| ||||| | Sbjct 2904 ATGCAGATCTTTGTCAAGACCCTCACCGGAAAAACCATCACTCTCGAAGTTGAAGCGTCG 2963 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||| ||||| |||||||| || || ||||| Sbjct 2964 GACACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAG 3023 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || |||||||| ||||| Sbjct 3024 CAGCGATTGATCTTCGCCGG 3043 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || ||||| || || || ||||||||||| || ||| || Sbjct 3497 ATGCAGATTTTTGTCAAGACCCTCACCGGAAAGACCATCACGCTCGAAGTTGAGGCCTCC 3556 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || |||||||| ||||| |||||||| || || |||||| Sbjct 3557 GACACAATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAA 3616 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| ||||| || || || Sbjct 3617 CAACGATTGATTTTCGCTGG 3636 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || ||||| || || || || || ||||| | Sbjct 4092 ATGCAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAGGTCGAAGCTTCG 4151 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| |||||||| || || ||||| Sbjct 4152 GACACGATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 4211 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| |||||||||||||| Sbjct 4212 CAACGGTTGATCTTTGCCGG 4231 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||| ||||| || ||| || Sbjct 3201 ATGCAGATCTTCGTGAAGACCCTCACAGGAAAGACCATCACGCTTGAAGTTGAGGCCTCC 3260 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||||| ||||| ||||| || || || ||||| Sbjct 3261 GACACGATCGAAAATGTGAAAGCTAAGATCCAGGACAAGGAAGGTATTCCACCAGATCAG 3320 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || |||||||| ||||| Sbjct 3321 CAGCGGTTGATCTTCGCCGG 3340 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || || || || || ||||| || || ||| || Sbjct 4388 ATGCAGATTTTCGTCAAAACCCTCACAGGAAAGACGATCACCCTCGAGGTTGAGGCCTCC 4447 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||||||| ||||| |||||||| || || ||||| Sbjct 4448 GATACGATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAG 4507 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || ||||||||||| || Sbjct 4508 CAGCGATTGATCTTTGCTGG 4527 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || |||||||| || ||||||||||| ||||| || ||||| Sbjct 2305 ACAATGCAGATTTTCGTAAAGACGCTAACAGGCAAAACTATTACCCTCGAGGTGGAAGCT 2364 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | || ||| || || |||||||| || ||||| || |||||| Sbjct 2365 TCTGATACCATTGAGAATGTGAAAGCTAAAATTCAAGACAAGGAGGGAATCCCACCCGAT 2424 Query 24821 CAACAACGTTTGATCTTTGCCGG 24843 || ||| | ||||||| || || Sbjct 2425 CAGCAAAGACTGATCTTCGCAGG 2447 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || ||||| || || || ||||| ||||| | Sbjct 3793 ATGCAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAAGTCGAAGCTTCG 3852 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| || ||||| |||||||| || || ||||| Sbjct 3853 GACACGATTGAGAATGTCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCTGATCAG 3912 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||| | |||||||| || || Sbjct 3913 CAAAGATTGATCTTCGCTGG 3932 >seq28266 Length=552 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || ||||| || || || ||||| ||||| | Sbjct 185 ATGCAGATCTTCGTGAAAACCCTCACTGGGAAAACCATCACCCTTGAAGTCGAAGCTTCG 244 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| || ||||| |||||||| || || ||||| Sbjct 245 GACACGATTGAGAATGTCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCTGATCAG 304 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||| | |||||||| || || Sbjct 305 CAAAGATTGATCTTCGCTGG 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449732403225000