Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3746 176 7e-38 seq2624 172 9e-37 seq211 96.9 5e-14 >seq3746 Length=19294 Score = 176 bits (194), Expect = 7e-38 Identities = 182/236 (77%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| |||| ||||| ||| ||| Sbjct 5011 TGTACTTGGTGACGGCCTTGGTGCCCTCGGATACGGCGTGCTTGGCGAGTTCTCCGGGCA 5070 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || |||||||||||||| || |||| | |||||| ||| ||||| || | Sbjct 5071 GGATCAGACGGACGGCGGTCTGGATTTCACGGGAGGAGATCGTCGAGCGTTTGTT-GTAC 5129 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| ||| || || | | || || |||| | ||||||||| || || ||| Sbjct 5130 TGGGCCAGACGGGAAGCTTCAGCAGCAATACGTTCGAATACGTCGTTGACGAAGGAATTC 5189 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||| ||||||| |||| |||| ||| ||| ||||| || ||||| ||||| Sbjct 5190 ATGATGGACATCGCTTTGGATGAGACGCCGGTGTCCGGGTGGACTTGCTTCAGCAC 5245 >seq2624 Length=26635 Score = 172 bits (190), Expect = 9e-37 Identities = 179/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| ||||| |||||||||||| |||| || || ||| | | Sbjct 25808 TGTACTTCGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCGAGCTCTCCGGGAA 25867 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || |||||||||||||| ||||| | |||||| |||||||| | Sbjct 25868 GGATCAGTCGGACGGCGGTCTGGATTTCGCGAGACGAGATCGTCGATCGCTTGTTGTAGT 25927 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| |||| || || | | |||| | |||| | |||||| || |||||||||| Sbjct 25928 GAGCCAGACGGCTCGCTTCAGCGGCGATTCTCTCGAATACGTCGTTCACGAACGAGTTCA 25987 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||| | || ||||| || ||||||||| |||||||| || || Sbjct 25988 TGATCGACATAGCCTTTGAGGAGACTCCGGTGTCGGGGTGAACCTGCTTCAGGAC 26042 >seq211 Length=126763 Score = 96.9 bits (106), Expect = 5e-14 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 2035625 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTT 2035684 |||| | || || |||||||||||||||||||| |||||||||||| || || ||| | Sbjct 90687 CACCTTGTTCGAATTGATCCTCGCCGCCAACTATCTCGACATCAAGGGGCTTCTTGATGT 90746 Query 2035685 GGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGAC 2035744 |||||||| |||||||| | ||||| || || |||| ||||| || || || Sbjct 90747 CACCTGCAAGACTGTGGCCAATATGATCAAAGGAAAAACGCCAGAGGAAATTCGTCGCAC 90806 Query 2035745 CTTTAACATCAAG 2035757 || ||||||||| Sbjct 90807 TTTCAACATCAAG 90819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913121647270625