Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7726 93.3 3e-14 seq20723 84.2 1e-11 seq17 82.4 5e-11 >seq7726 Length=8395 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 ||||||||||||| || ||||| ||| | || | || |||||||| | || || | Sbjct 3340 CCGGCGAAGATCAACCGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATCTTAGCT 3281 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || || | | |||| || |||||| || |||| || ||||||||||| |||||| Sbjct 3280 TTCACATTTTCGATCGTGTCGGAGGCCTCAACTTCAAGCGTGATGGTCTTTCCTGTGAGG 3221 Query 34958 GTCTTTACAAAGATCTGCATG 34978 ||||| || |||||||||||| Sbjct 3220 GTCTTCACGAAGATCTGCATG 3200 >seq20723 Length=1367 Score = 84.2 bits (92), Expect = 1e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 ||||||||||||| ||| ||||| ||| | || | ||||||||||| | || || Sbjct 166 CCGGCGAAGATCAATCGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCC 107 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 ||||| | | || | || |||||| || || | ||| || |||||||| |||||| Sbjct 106 TTGACATTTTCGATTGTATCGGAGGCCTCAACCTCGAGGGTGATTGTCTTTCCTGTGAGG 47 Query 34958 GTCTTTACAAAGATCTGCATG 34978 || || || || ||||||||| Sbjct 46 GTTTTGACGAAAATCTGCATG 26 >seq17 Length=262609 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||| || || ||||| ||| |||| | ||||||||||| | || ||| | Sbjct 67095 CCTGCGAAGATAAGCCGCTGCTGATCTGGCGGAATACCCTCCTTGTCCTGAATCTTTGCT 67036 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| | || | || || ||||| |||| || |||||||||||||| || Sbjct 67035 TTCACGTTCTCAATAGTGTCCGATGCTTCGACTTCAAGCGTGATGGTCTTTCCCGTTAGA 66976 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| ||||| || ||||| Sbjct 66975 GTCTTGACAAAAATTTGCAT 66956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325576199433125