Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq28266 105 5e-18 seq7726 105 5e-18 seq17 93.3 3e-14 seq20723 91.5 1e-13 >seq28266 Length=552 Score = 105 bits (116), Expect = 5e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 ||||| | ||||||||||||||||| || || || || || ||||| || ||| || | Sbjct 324 CCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTG-AATCTTGGC 266 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||||||| | || | ||||| ||| ||| |||||||| || || ||||| ||||| | Sbjct 265 TTTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAG 206 Query 29766 GGTTTTAACAAATATCTGCATT 29787 |||||| || || ||||||||| Sbjct 205 GGTTTTCACGAAGATCTGCATT 184 >seq7726 Length=8395 Score = 105 bits (116), Expect = 5e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 ||||| | ||||||||||||||||| || || || || || ||||| || ||| || | Sbjct 3932 CCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTG-AATCTTGGC 3874 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||||||| | || | ||||| ||| ||| |||||||| || || ||||| ||||| | Sbjct 3873 TTTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAG 3814 Query 29766 GGTTTTAACAAATATCTGCATT 29787 |||||| || || ||||||||| Sbjct 3813 GGTTTTCACGAAGATCTGCATT 3792 Score = 98.7 bits (108), Expect = 8e-16 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGT 29714 |||| |||||||||||| || || || ||||| |||||||| |||||| | ||| ||| | Sbjct 2438 ATCAGTCTTTGCTGATCGGGTGGGATTCCCTCCTTGTCTTG-AATTTTAGCTTTCACATT 2380 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 || | || |||||| ||| || || || || ||||||||||| |||| || || || Sbjct 2379 CTCAATGGTATCAGAAGCTTCCACCTCGAGGGTAATAGTTTTGCCTGTTAGCGTCTTTAC 2320 Query 29775 AAATATCTGCATT 29787 || ||||||||| Sbjct 2319 GAAAATCTGCATT 2307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | ||||||| ||||||||| || || || || || ||||| || ||| || Sbjct 4828 TTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG-AATCTT 4770 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||||||| |||| | ||||| ||| ||| ||||| || || || || || || || Sbjct 4769 CGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGT 4710 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | || || || ||||||||||| Sbjct 4709 GAGCGTCTTCACGAATATCTGCAT 4686 >seq17 Length=262609 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| | || | || ||||||||||| |||||||| || |||||||| | || Sbjct 66161 CCTGCAAAGATGAGTCGCTGCTGATCCGGTGGAATACCTTCCTTGTCTTGGATCTTAGCC 66102 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| |||| | |||||||| ||| || ||||| || ||||| || ||||| | | Sbjct 66101 TTTACATTTTCAATCGTGTCAGAGGCTTCAACCTCAAGCGTGATAGTCTTTCCAGTAAGG 66042 Query 29767 GTTTTAACAAATATCTGCATT 29787 ||||| ||||| || |||||| Sbjct 66041 GTTTTCACAAAAATTTGCATT 66021 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| |||||||||||||| ||||| || ||| |||| ||| || | || | ||| Sbjct 67077 TGCTGATCTGGCGGAATACCCTCCTTGTCCTG-AATCTTTGCTTTCACGTTCTCAATAGT 67019 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| || ||| |||||||| || || || || || |||| || || ||||| || || Sbjct 67018 GTCCGATGCTTCGACTTCAAGCGTGATGGTCTTTCCCGTTAGAGTCTTGACAAAAATTTG 66959 Query 29784 CATT 29787 |||| Sbjct 66958 CATT 66955 >seq20723 Length=1367 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | ||||||| ||||||||| || || || || || ||||| || ||| || Sbjct 465 TTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG-AATCTT 407 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||||||| |||| | ||||| ||| ||| ||||| || || || || || || || Sbjct 406 CGCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGT 347 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | || || || ||||||||||| Sbjct 346 GAGCGTCTTCACGAATATCTGCAT 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385081288516875