Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq17 127 4e-24 seq20723 123 5e-23 seq7726 123 5e-23 seq28266 105 1e-17 >seq17 Length=262609 Score = 127 bits (140), Expect = 4e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| ||||| |||||||| |||||||||||||| || ||||| || Sbjct 66742 CCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGGATCTTCGCC 66683 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| |||||| || ||||||||||| || || ||||| || || | Sbjct 66682 TTCACATTTTCAATAGTATCAGAAGCTTCTACTTCCAGCGTAATAGTCTTTCCGGTAAGA 66623 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || || ||||| Sbjct 66622 GTTTTGACGAAAATTTGCAT 66603 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||||| || || || |||||||||||||||||||| |||||| Sbjct 68425 CCAGCAAAAATGAGCCGCTGTTGGTCAGGTGGAATTCCTTCCTTATCTTGAATTTTTGCT 68366 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| || || | || || ||||| ||||| || || || ||||| Sbjct 68365 TTAACATTCTCAATGGTGTCCGACGCCTCCACCTCCAACGTTATTGTTTTCCCAGTCAAT 68306 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| ||||||||| Sbjct 68305 GTCTTGACAAAAATCTGCATT 68285 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| |||| || ||||| || || || |||||||| ||||| ||||| || Sbjct 66161 CCTGCAAAGATGAGTCGCTGCTGATCCGGTGGAATACCTTCCTTGTCTTGGATCTTAGCC 66102 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||||||||| ||| | ||| || || | || || ||||| || || | Sbjct 66101 TTTACATTTTCAATCGTGTCAGAGGCTTCAACCTCAAGCGTGATAGTCTTTCCAGTAAGG 66042 Query 82791 GTCTTTACAAATATCTGCATTATT 82814 || || ||||| || |||||| || Sbjct 66041 GTTTTCACAAAAATTTGCATTCTT 66018 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || |||| || || || || |||||||| ||||| ||||| ||||| ||| Sbjct 68141 CCTGCAAAAATGAGTCGCTGCTGGTCAGGTGGTATTCCCTCCTTGTCTTGGATCTTCGCT 68082 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||||||||| ||| | ||| || || | || || ||||| || || | Sbjct 68081 TTTACATTTTCAATCGTGTCAGACGCTTCAACCTCAAGCGTGATGGTCTTTCCAGTGAGT 68022 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || ||||| || |||||| Sbjct 68021 GTTTTCACAAAAATTTGCATT 68001 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| || | || |||||||| || || |||||||| ||||| ||||| || Sbjct 68747 CCAGCAAAGATGAGACGCTGCTGATCTGGGGGAATCCCTTCCTTGTCTTGGATCTTGGCC 68688 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| | || || || || || || | || |||||||| || |||| Sbjct 68687 TTGACATTTTCGACGGTGTCCGAAGCCTCCACCTCAAGCGTGATCGTCTTTCCGGTCAGG 68628 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| ||||||||| Sbjct 68627 GTCTTCACAAAGATCTGCATT 68607 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| ||||| || |||||||| || ||||||||||| ||||| ||||| | Sbjct 66459 CCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGAC 66400 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||| ||||| || || || | ||| ||||| | || ||||| || || || | Sbjct 66399 TTTACGTTTTCGATTGTGTCGGAGGCTTCAACTTCGAGTGTGATCGTTTTCCCGGTGAGA 66340 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || || || ||||||||| Sbjct 66339 GTTTTCACGAAAATCTGCATT 66319 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| || | || |||||||| || || || ||||| || |||||||||||| Sbjct 67095 CCTGCGAAGATAAGCCGCTGCTGATCTGGCGGAATACCCTCCTTGTCCTGAATCTTTGCT 67036 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || ||||| || || | ||| ||||| | || || ||||| || || | Sbjct 67035 TTCACGTTCTCAATAGTGTCCGATGCTTCGACTTCAAGCGTGATGGTCTTTCCCGTTAGA 66976 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 66975 GTCTTGACAAAAATTTGCATT 66955 >seq20723 Length=1367 Score = 123 bits (136), Expect = 5e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | || ||| |||||||| || ||||||||||| || |||||||| Sbjct 465 TTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTC 406 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| |||||||| || || || || ||| ||||| | || || ||||| || || Sbjct 405 GCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGTG 346 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| || ||||||||||| Sbjct 345 AGCGTCTTCACGAATATCTGCAT 323 >seq7726 Length=8395 Score = 123 bits (136), Expect = 5e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| | || ||| |||||||| || ||||||||||| || |||||||| Sbjct 4828 TTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGAATCTTC 4769 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| |||||||| || || || || ||| ||||| | || || ||||| || || Sbjct 4768 GCTTTGACATTTTCGATTGTGTCGGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCGGTG 4709 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| || ||||||||||| Sbjct 4708 AGCGTCTTCACGAATATCTGCAT 4686 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| | |||||| ||||| || || ||||||||||| || |||||||| ||| Sbjct 3932 CCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCT 3873 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| |||||||| || || ||| ||||| | || || || || || || | Sbjct 3872 TTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAGG 3813 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || || || ||||||||| Sbjct 3812 GTTTTCACGAAGATCTGCATT 3792 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| | || || |||||||| || ||||||||||| || || |||||||| Sbjct 4527 CCAGCAAAGATCAATCGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTTGCC 4468 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| |||||||| | || || || | || |||||||| ||||| | Sbjct 4467 TTAACATTTTCGATCGTATCGGAGGCCTCAACCTCGAGGGTGATCGTCTTTCCTGTGAGG 4408 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || |||||||| Sbjct 4407 GTTTTGACGAAAATCTGCAT 4388 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| | | ||| |||||||| || ||||||||||| ||||| ||||| ||| Sbjct 4231 CCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCT 4172 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| |||||||| || || ||| || || | || || || || || || | Sbjct 4171 TTGACATTCTCAATCGTGTCCGAAGCTTCGACCTCAAGGGTGATGGTTTTCCCAGTGAGG 4112 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || || || ||||||||| Sbjct 4111 GTTTTCACGAAGATCTGCATT 4091 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| | || || |||||||| || ||||||||||| || || |||||||| Sbjct 3043 CCGGCGAAGATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCC 2984 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || || || | ||| ||||| | ||| || || || || || | Sbjct 2983 TTAACATTTTCGATGGTGTCCGACGCTTCAACTTCGAGAGTGATGGTTTTTCCGGTGAGG 2924 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| ||||| |||||||| Sbjct 2923 GTCTTGACAAAGATCTGCAT 2904 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| || || | || |||||||||||| || ||||||||||| || || ||||| || Sbjct 3636 CCAGCGAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCC 3577 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || || || | || ||||| | || || ||||| || || | Sbjct 3576 TTGACATTTTCGATTGTGTCGGAGGCCTCAACTTCGAGCGTGATGGTCTTTCCGGTGAGG 3517 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| ||||| |||||||| Sbjct 3516 GTCTTGACAAAAATCTGCAT 3497 >seq28266 Length=552 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| | |||||| ||||| || || ||||||||||| || |||||||| ||| Sbjct 324 CCAGCGAAGATCAATCTTTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCT 265 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| |||||||| || || ||| ||||| | || || || || || || | Sbjct 264 TTGACATTCTCAATCGTGTCCGAAGCTTCGACTTCAAGGGTGATGGTTTTCCCAGTGAGG 205 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || || || ||||||||| Sbjct 204 GTTTTCACGAAGATCTGCATT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981457672458125