Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7726 93.3 4e-14 seq12672 87.8 2e-12 seq17 87.8 2e-12 seq20723 84.2 2e-11 seq2624 82.4 7e-11 >seq7726 Length=8395 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 |||||||| || || ||||| ||||||||||| ||||||| ||| | | || | | Sbjct 4512 CGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTAACATTTTCGATC 4453 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 || |||| || ||| || |||| ||||| || || || || || ||||| ||||||||| Sbjct 4452 GTATCGGAGGCCTCAACCTCGAGGGTGATCGTCTTTCCTGTGAGGGTTTTGACGAAAATC 4393 Query 133656 TGCATGGCT 133664 |||||| || Sbjct 4392 TGCATGCCT 4384 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | || || ||||||||||| || ||||| ||||||||||| |||| | Sbjct 2748 CTTACCTGCGAAGATCAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATC-T 2690 Query 133577 TTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | |||| | | | ||||| ||||| | | ||| || || | |||| || || |||| Sbjct 2689 TAGCTTTAACGTTCTCAATGGTGTCTGAAGCCTCAACCTCAAGTGTGATAGTCTTCCCGG 2630 Query 133636 TCAGAGTTTTTACGAAAATCTGCATGGCT 133664 | ||||| || ||||| || |||||| || Sbjct 2629 TGAGAGTCTTGACGAAGATTTGCATGCCT 2601 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594 ||| ||||| || || ||||| ||||||||||| |||||| |||| | ||||| Sbjct 4217 CCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAAT 4158 Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654 |||||| | | || || || | ||||| |||||| || || || ||||| ||||| || Sbjct 4157 CGTGTCCGAAGCTTCGACCTCAAGGGTGATGGTTTTCCCAGTGAGGGTTTTCACGAAGAT 4098 Query 133655 CTGCAT 133660 |||||| Sbjct 4097 CTGCAT 4092 >seq12672 Length=3626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTT-TG 133579 || || ||||| | |||||||| ||||| || || ||||||||||| ||| |||| Sbjct 2858 CCGGCATAAATAATTCGCTGCTGATCGGGCGGAATCCCTTCCTTGTC-TTGAACTTTCAA 2916 Query 133580 CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 || | | || || |||||| |||||| || |||| |||| || || ||||| || Sbjct 2917 TTTCACATTTTCCACAGTGTCGACGGGCTCGACTTCGAGTGTGATAGTCTTTCCGGTGAG 2976 Query 133640 AGTTTTTACGAAAATCTGCATGGCT 133664 |||||| ||||||| ||||||| || Sbjct 2977 AGTTTTGACGAAAACCTGCATGACT 3001 >seq17 Length=262609 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||| | |||||| || || || || ||||||||||| |||||| ||| | | Sbjct 66450 ATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGACTTTACGTTT 66391 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||||||| || || || |||| |||| ||||| ||||| |||||||| ||| Sbjct 66390 TCGATTGTGTCGGAGGCTTCAACTTCGAGTGTGATCGTTTTCCCGGTGAGAGTTTTCACG 66331 Query 133650 AAAATCTGCAT 133660 ||||||||||| Sbjct 66330 AAAATCTGCAT 66320 Score = 82.4 bits (90), Expect = 7e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGC- 133586 ||||||||||||| ||||| || || || |||||||| || ||| |||||||| | | Sbjct 68418 AAATGAGCCGCTGTTGGTCAGGTGGAATTCCTTCCTTATCT-TGAATTTTTGCTTTAACA 68360 Query 133587 TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTT 133646 | ||||| ||||| | | |||||| || | || | ||||| || |||| || || Sbjct 68359 TTCTCAATGGTGTCCGACGCCTCCACCTCCAACGTTATTGTTTTCCCAGTCAATGTCTTG 68300 Query 133647 ACGAAAATCTGCAT 133660 || ||||||||||| Sbjct 68299 ACAAAAATCTGCAT 68286 >seq20723 Length=1367 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 |||||||| || || ||||| || |||||||| |||||| ||||| | || | Sbjct 151 CGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATT 92 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 || |||| || ||| || |||| ||||| || || || || || ||||| ||||||||| Sbjct 91 GTATCGGAGGCCTCAACCTCGAGGGTGATTGTCTTTCCTGTGAGGGTTTTGACGAAAATC 32 Query 133656 TGCATGGCT 133664 |||||| || Sbjct 31 TGCATGCCT 23 >seq2624 Length=26635 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 133509 TCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCG 133568 ||||| | | | || || ||||| | |||||||| ||||| || || ||||||||||| Sbjct 21703 TCGAGATACCTACCGGCATAAATAATTCGCTGCTGATCGGGCGGAATCCCTTCCTTGTC- 21761 Query 133569 GTGATCTTT-TGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGT 133627 ||| |||| || | | || || |||||| |||||| | |||| |||| || Sbjct 21762 TTGAACTTTCAATTTCACATTTTCCACAGTGTCGACGGGCTCGAGTTCGAGTGTGATTGT 21821 Query 133628 TTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || ||||| |||||||| || |||| ||||||| || Sbjct 21822 CTTTCCGGTGAGAGTTTTGACAAAAACCTGCATGACT 21858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483243293925000