Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nippostrongylus_20brasiliensis_20[genbank_20GCA_5F000951335.1_202014 -09-26] 29,375 sequences; 294,400,206 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2624 145 1e-28 seq3746 123 4e-22 seq636 107 3e-17 >seq2624 Length=26635 Score = 145 bits (160), Expect = 1e-28 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||| || || |||||||| |||||| |||| | | | ||||| || | | Sbjct 26051 ATCTACCGTGTCCTGAAGCAGGTTCACCCCGACACCG--GAGTC-TCCTCAAA---GGCT 25998 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||||||||||||||| || |||||| | |||| | |||| | | || || | Sbjct 25997 ATGTCGATCATGAACTCGTTCGTGAACGACGTATTCGAGAGAATCGCCGCTGAAGCGAGC 25938 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || ||||||||| |||||| | ||||| |||||||||||||| Sbjct 25937 CGTCTGGCTCACTACAACAAGCGATCGACGATCTCGTCTCGCGAAATCCAGACCGCCGTC 25878 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || |||||| | | ||| || || |||| |||||||||||| |||||||||| Sbjct 25877 CGACTGATCCTTCCCGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGCACCA 25826 >seq3746 Length=19294 Score = 123 bits (136), Expect = 4e-22 Identities = 164/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||||| ||||| || ||||| |||| | | | || ||||| || | ||||| ||| Sbjct 5245 GTGCTGAAGCAAGTCCACCCGGACACCG--GCGTC-TCATCCAA--AG-CGATGTCCATC 5192 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 ||||| || || ||||||||| | |||| || || | | || || || ||||| Sbjct 5191 ATGAATTCCTTCGTCAACGACGTATTCGAACGTATTGCTGCTGAAGCTTCCCGTCTGGCC 5132 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | | |||||| ||| |||||| | | || || |||||||||||||| || |||||| Sbjct 5131 CAGTACAACAAACGCTCGACGATCTCCTCCCGTGAAATCCAGACCGCCGTCCGTCTGATC 5072 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| ||| ||||| |||| ||||||||| ||||||||||||| Sbjct 5071 CTGCCCGGAGAACTCGCCAAGCACGCCGTATCCGAGGGCACCA 5029 >seq636 Length=76548 Score = 107 bits (118), Expect = 3e-17 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 259964 TCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTC 260023 ||||| ||||| ||| || ||||| | |||||||||| || |||||||||||| | Sbjct 21454 TCGTCATGCTTCCTGCTGACCATGAGTGAGGATTCGATCGCTGGAATCTATGACACGTTG 21395 Query 260024 AAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTG 260083 |||||||| || || ||||| ||| ||||| |||||||| | | || ||| | Sbjct 21394 AAGCAGTGTGCCCTGATCTCGAAGAGTGCCGGAGGCATCGGCCTAAATGTTCATAAGATT 21335 Query 260084 CGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATG 260143 || ||| |||| | | | || || || |||||| |||||||| || | || ||| Sbjct 21334 CGTGCCACGGGATCGTTAATTGCCGGAACGAACGGCACCTCCAACGGTCTGATTCCTATG 21275 Query 260144 CTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 |||||||| | || |||| || || || || || ||| || Sbjct 21274 CTTCGCGTCTACAATAACACTGCTCGTTATGTGGATCAGGGC 21233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174977927258750